SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48064

Length: 388 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene48064
TGCCGTGCGCTCGACAACATCCCGCAGCCCTGCCACGTGAGTTCTATTCTCAGAGAACCACGAGAGGAGGCCTCCTCATCACAGAGGCAAACGCAGTCTCGCAGCAAGCCATTGGGTTCCCGCATTCTCCTGGCATTTTCAACGATGAGCAAGTCAAGGCCTGGAAAAATGTTGTAGACGCAGTTCATGAGAAGGGCGGCATCATTTTCTGCCAGATATGGCATGTTGGCAGGGCGTCACACACAGTTTATCAGCCGAATGCGACGCCTTATGAAATATAGATTTCAAAACCAATACAATTTTATAAATGTTGCTCATTCTATTGCGCGGATTCACTTTCTATTCTAATTAAGTCAAGATCGGACGCATTCTCTGCAAACCATGTCTT

Ace file of the UniGene sp_v1.1_unigene48064 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OPR3; OPR3 (OPDA-REDUCTASE 3); 12-oxophytodienoate reductase (EC:1.3.1.42); K05894 12-oxophytodienoic acid reductase [EC:1.3.1.42]	-	-	2.0e-26	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	12-oxophytodienoate reductase	-	-	1.98948e-26	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	12-oxophytodienoate reductase.	EC:1.3.1.42	-	1.98948e-26	75%

Source	KEGGs	Term	e value	Identity
Blast2go	alpha-Linolenic acid metabolism	00592	1.98948e-26	75%
Blast2go	Biosynthesis of plant hormones	01070	1.98948e-26	75%
Blast2go	Metabolic pathways	01100	1.98948e-26	75%

Source	ECs	Term	Type	e value	Identity
AutoFact	12-oxophytodienoate reductase.	EC:1.3.1.42	-	2.0e-26	61%

Source	KEGGs	Term	e value	Identity
AutoFact	alpha-Linolenic acid metabolism	00592	2.0e-26	61%
AutoFact	Biosynthesis of plant hormones	01070	2.0e-26	61%
AutoFact	Metabolic pathways	01100	2.0e-26	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	1.98948e-26	75%
Blast2go	response to wounding	GO:0009611	Biological Process	1.98948e-26	75%
Blast2go	response to ozone	GO:0010193	Biological Process	1.98948e-26	75%
Blast2go	response to fungus	GO:0009620	Biological Process	1.98948e-26	75%
Blast2go	12-oxophytodienoate reductase activity	GO:0016629	Molecular Function	1.98948e-26	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	1.98948e-26	75%
Blast2go	Aldolase-type TIM barrel	IPR013785	-	1.98948e-26	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P127

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 206 aas, your sequence is shorter than subject: 93 - 376

Fln protein: PCARQHPAALPREFYSQRTTRGGLLITEANAVSQQAIGFPHSPGIFNDEQVKAWKNVVDAVHEKGGIIFCQIWHVGRASHTVYQPNATPYEI*

Protein Length: 94

Fln nts: TGCCGTGCGCTCGACAACATCCCGCAGCCCTGCCACGTGAGTTCTATTCTCAGAGAACCACGAGAGGAGGCCTCCTCATCACAGAGGCAAACGCAGTCTCGCAGCAAGCCATTGGGTTCCCGCATTCTCCTGGCATTTTCAACGATGAGCAAGTCAAGGCCTGGAAAAATGTTGTAGACGCAGTTCATGAGAAGGGCGGCATCATTTTCTGCCAGATATGGCATGTTGGCAGGGCGTCACACACAGTTTATCAGCCGAATGCGACGCCTTATGAAATATAGATTTCAAAACCAATACAATTTTATAAATGTTGCTCATTCTATTGCGCGGATTCACTTTCTATTCTAATTAAGTCAAGATCGGACGCATTCTCTGCAAACCATGTCTT

Fln Alignment:

sp_v1.1_unigene48064___FYSQRTTRGGLLITEANAVSQQAIGFPHSPGIFNDEQVKAWKNVVDAVHEKGGIIFCQIWHVGRASHTVYQPN
A9P127_______________YYSQRTSPGGLLIAEATGVSDSAQGYPNTPGIWTEEQVEAWKPIVNGVHEKGGVFFCQIWHSGRASHVDYQPN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain