SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48053

Length: 321 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene48053
CGTCAAGGCAGTGCAATCATTGGCACATTTGGACAATCTGAAGAATTACGCTGTGTTATTGCTGTTGTCCGCCATGGTGATCGGACACCTAAGCAGAAAGTAAAGCTAAAAGTGACACAGGAAAGGCTTTTAAATTTGATGCTCAAATACAATGGTGGAAGGCCACGAGCAGAGACAAAACTGAAAAGTGCCATACAGTTGCAGGACCTTTTAGATGCAACACGGATGCTTGTTCCACGTGCCAGGTCTGGGAGGGAGAGCGATAGTGATGCTGAAGACCTTGAACACACAGAAAAGCTTCGACATGTCAAAGCTGTCCTT

Ace file of the UniGene sp_v1.1_unigene48053 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acid phosphatase/ oxidoreductase/ transition metal ion binding	-	-	91%
FL-Next	tr=Phosphoglycerate mutase-like-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	91%
Blast2go	acid phosphatase	-	-	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histidine phosphatase superfamily, clade-2	IPR000560	-	0.0	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F4J8C6

Fln msg: Distance to subject end: 595 aas, your sequence is shorter than subject: 107 - 1050

Fln protein: RQGSAIIGTFGQSEELRCVIAVVRHGDRTPKQKVKLKVTQERLLNLMLKYNGGRPRAETKLKSAIQLQDLLDATRMLVPRARSGRESDSDAEDLEHTEKLRHVKAVL

Protein Length: 108

Fln nts: CGTCAAGGCAGTGCAATCATTGGCACATTTGGACAATCTGAAGAATTACGCTGTGTTATTGCTGTTGTCCGCCATGGTGATCGGACACCTAAGCAGAAAGTAAAGCTAAAAGTGACACAGGAAAGGCTTTTAAATTTGATGCTCAAATACAATGGTGGAAGGCCACGAGCAGAGACAAAACTGAAAAGTGCCATACAGTTGCAGGACCTTTTAGATGCAACACGGATGCTTGTTCCACGTGCCAGGTCTGGGAGGGAGAGCGATAGTGATGCTGAAGACCTTGAACACACAGAAAAGCTTCGACATGTCAAAGCTGTCCTT

Fln Alignment:

sp_v1.1_unigene48053___RQGSAIIGTFGQSEELRCVIAVVRHGDRTPKQKVKLKVTQERLLNLMLKYNGGRPRAETKLKSAIQLQDLLDATRMLVPRARSGRESDSDAEDLEHTEKLRHVKAVL
F4J8C6_______________RQGSGIIGTFGQSEELRCVIAVVRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGKPRAETKLKSAVQLQDLLDATRMLVPRTRPGRESDSDAEDLEHAEKLRQVKAVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain