SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene48043

Length: 530 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene48043
ATCTGCTGCTTCTCTTTCGTTGCTTCTAAATCGTCTCGATCCAATCCTTCGGAACATTGCCAACCTTGGACACTGGCAAATAATCAGTCCAGTAGAAGTGCGTGGCTTTGTCACTATAATAGATGATTTACTTAGGGTTCAAAACAAGGTCTATGATAGACCAACAATCTTAGTTGCAAACAGAGTAAAGGGAGAGGAAGAAATTCCAGATGGTGTTGTTGCTGTTCTGACAGCTGATATGCCAGATGTTCTATCCCATGTTTCAGTGCGAGCAAGAACCTGCAAGGTATGTTTTGCTACATGTTTTGACCAGAAGATTCTCAATGATTTCCGAGCAAAAGAAGGGAAGGCATTGCTGATACGGCCTTCTTCATCGGGCTTGACTTATTCTGAAATTGATGGGACTGATGTGCTGGGAGGTTGTGCAATATTTTCATCTTCAAATGAGCGGACCCCAAGAATCATTTTAAAGAAGAAGCATTTTGCTGGAACATATGCAGTGTCAGCTGATGAATTTAATCGTGAACTGG

Ace file of the UniGene sp_v1.1_unigene48043 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-glucan water dikinase 1, chloroplastic n=2 Tax=Arabidopsis RepID=GWD1_ARATH	-	-	59%
FL-Next	sp=Alpha-glucan water dikinase 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	glucan water dikinase	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-glucan, water dikinase.	EC:2.7.9.4	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	response to symbiotic fungus	GO:0009610	Biological Process	74%
Blast2go	starch catabolic process	GO:0005983	Biological Process	74%
Blast2go	cold acclimation	GO:0009631	Biological Process	74%
Blast2go	alpha-glucan, water dikinase activity	GO:0050521	Molecular Function	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	mitochondrion	GO:0005739	Cellular Component	74%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SAC6

Fln msg: Distance to subject end: 307 aas, your sequence is shorter than subject: 176 - 1399

Fln protein: SAASLSLLLNRLDPILRNIANLGHWQIISPVEVRGFVTIIDDLLRVQNKVYDRPTILVANRVKGEEEIPDGVVAVLTADMPDVLSHVSVRARTCKVCFATCFDQKILNDFRAKEGKALLIRPSSSGLTYSEIDGTDVLGGCAIFSSSNERTPRIILKKKHFAGTYAVSADEFNREL

Protein Length: 177

Fln nts: ATCTGCTGCTTCTCTTTCGTTGCTTCTAAATCGTCTCGATCCAATCCTTCGGAACATTGCCAACCTTGGACACTGGCAAATAATCAGTCCAGTAGAAGTGCGTGGCTTTGTCACTATAATAGATGATTTACTTAGGGTTCAAAACAAGGTCTATGATAGACCAACAATCTTAGTTGCAAACAGAGTAAAGGGAGAGGAAGAAATTCCAGATGGTGTTGTTGCTGTTCTGACAGCTGATATGCCAGATGTTCTATCCCATGTTTCAGTGCGAGCAAGAACCTGCAAGGTATGTTTTGCTACATGTTTTGACCAGAAGATTCTCAATGATTTCCGAGCAAAAGAAGGGAAGGCATTGCTGATACGGCCTTCTTCATCGGGCTTGACTTATTCTGAAATTGATGGGACTGATGTGCTGGGAGGTTGTGCAATATTTTCATCTTCAAATGAGCGGACCCCAAGAATCATTTTAAAGAAGAAGCATTTTGCTGGAACATATGCAGTGTCAGCTGATGAATTTAATCGTGAACTGG

Fln Alignment:

sp_v1.1_unigene48043___NRLDPILRNIANLGHWQIISPVEVRGFVTIIDDLLRVQNKVYDRPTILVANRVKGEEEIPDGVVAVLTADMPDVLSHVSVRARTCKVCFATCFDQKILNDFRAKEGKALLIRPSSSGLTYSEIDGTDVLGGCAIFSSSNERTPRIILKKKHFAGTYAVSADEFNREL
Q9SAC6_______________NRLDPVLRKTANLGSWQVISPVEVVGYVIVVDELLTVQNKTYDRPTIIVANRVRGEEEIPDGAVAVLTPDMPDVLSHVSVRARNGKICFATCFDSGILSDLQGKDGKLLSLQPTSADVVYKEVNDSELSSPSS--DNLEDAPPSISLVKKQFAGRYAISSEEFTSDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain