SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47997

Length: 497 nt

UniGene Fasta

>sp_v1.1_unigene47997
TTTGTTAGTTAAAGGTTTAGGTTCTTCTAAAAGGTAAGTAATTGTTTGGCAACCTTCTTTGGAATCTTCTCTTGCTGTCATATGCTGCTAATTTCAAAATGAGAAATCTGCAAAGAGAATTTTTGAATATGGTCGATGCTGGTTTCAAGCCTGACCTAACAACCTTCAACATTCGTGCTCTAGCCTTCTCAAGGGTGGTGAGTTTTGGTGTCTTCAGTTAGTGTCCTTCACATGCAACATATGAATATTGCTCCTGATATTGTGACATTTGGTGCAATTGTCGATTCATACTTGAATGGAAAGATGGCCAACAAGCTCTCCTTGGCACTAAGTCAAATTGGAGTGCATAACCTTTATCCCAATGTATTGACCGATCCTTTAGTTTATGAGGCATTTGGAAAAGGGGATTTCCATGTCAGTGCTGAAAATATAATTGCAATACCCACATAAGAAGCATCGAGAGAAATGGACATACTCCAAACTACTAAGATTTTACC

Ace file of the UniGene sp_v1.1_unigene47997

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein n=1 Tax=Olimarabidopsis pumila RepID=Q287W6_OLIPU	-	-	1.0e-26	46%
FL-Next	sp=Pentatricopeptide repeat-containing protein At3g42630; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	80%
Blast2go	pentatricopeptide repeat protein	-	-	2.15363e-26	70%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9M2A1

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 103 aas, putative chimeric sequence, your sequence is shorter than subject: 73 - 415

Fln protein: C*LKV*VLLKGK*LFGNLLWNLLLLSYAANFKMRNLQREFLNMVDAGFKPDLTTFNIRALAFSRVVSFGVFS*

Protein Length: 74

Fln nts: TTTGTTAGTTAAAGGTTTAGGTTCTTCTAAAAGGTAAGTAATTGTTTGGCAACCTTCTTTGGAATCTTCTCTTGCTGTCATATGCTGCTAATTTCAAAATGAGAAATCTGCAAAGAGAATTTTTGAATATGGTCGATGCTGGTTTCAAGCCTGACCTAACAACCTTCAACATTCGTGCTCTAGCCTTCTCAAGGGTGGTGAGTTTTGGTGTCTTCAGTTAG___TGTCCTTCACATGCAACATATGAATATTGCTCCTGATATTGTGACATTTGGTGCAATTGTCGATTCATACTTGAATGGAAAGATGGCCAACAAGCTCTCCTTGGCACTAAGTCAAATTGGAGTGCATAACCTTTATCCCAATGTATTGACCGATCCTTTAGTTTATGAGGCATTTGGAAAAGGGGATTTCCATGTCAGTGCTGAAAATATAATTGCAATACCCACATAAGAAGCATCGAGAGAAATGGACATACTCCAAACTACTAAGATTTTACC

Fln Alignment:

sp_v1.1_unigene47997___SYAANFKMRNLQREFLNMVDAGFKPDLTTFNIRALA
Q9M2A1_______________SYAADFKMKSLQREFIGMLDAGFSPDLTTFNIRALA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain