SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47951

Length: 476 nt

UniGene Fasta

>sp_v1.1_unigene47951
ATTTGAACTCGTCAAGCAATGTCCTAACTGGGAGGATTCCTCCCGAGCTTTCATTTATTAAAGGACTTAAGATATTGAATCTGAACACGAATAGCCTAACTGGTAGGATTCCAGAGGAGTTTCATAGTCTCGAGTCTCTACAGGAGCTTCAGCTCTCTGTAAACCGTCTGACCGGTCCTATTCCACAGTGGATCAGCAATTTGACCAGTCTTGAGATCTTCACAGCATACGAGAATTCGTTCAATGGCTCGATACCACAAAATCTTGGTTTGAATTCCAACCTGGAAGTGCTGAATCTCCATTCAAATAAGCTTGTTGGAAGCATTCCTGAGAGCATTTTTGCATCTGGGCAGCTTCAAGTTCTTATTTTAACTATGAATAGTTTAGATGGTAGCCTTCCTCGGTCTGTAGGCAAATGCAAAGGCTTGTCCAATCTTCGCATAGGAAGCAATAAGCTTACAGGAAGCATACCTCCA

Ace file of the UniGene sp_v1.1_unigene47951

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat transmembrane protein kinase, putative	-	-	8.0e-37	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	receptor-like protein kinase	-	-	0.0	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRM4

Fln msg: Distance to subject end: 611 aas, your sequence is shorter than subject: 158 - 907

Fln protein: LNSSSNVLTGRIPPELSFIKGLKILNLNTNSLTGRIPEEFHSLESLQELQLSVNRLTGPIPQWISNLTSLEIFTAYENSFNGSIPQNLGLNSNLEVLNLHSNKLVGSIPESIFASGQLQVLILTMNSLDGSLPRSVGKCKGLSNLRIGSNKLTGSIPP

Protein Length: 159

Fln nts: ATTTGAACTCGTCAAGCAATGTCCTAACTGGGAGGATTCCTCCCGAGCTTTCATTTATTAAAGGACTTAAGATATTGAATCTGAACACGAATAGCCTAACTGGTAGGATTCCAGAGGAGTTTCATAGTCTCGAGTCTCTACAGGAGCTTCAGCTCTCTGTAAACCGTCTGACCGGTCCTATTCCACAGTGGATCAGCAATTTGACCAGTCTTGAGATCTTCACAGCATACGAGAATTCGTTCAATGGCTCGATACCACAAAATCTTGGTTTGAATTCCAACCTGGAAGTGCTGAATCTCCATTCAAATAAGCTTGTTGGAAGCATTCCTGAGAGCATTTTTGCATCTGGGCAGCTTCAAGTTCTTATTTTAACTATGAATAGTTTAGATGGTAGCCTTCCTCGGTCTGTAGGCAAATGCAAAGGCTTGTCCAATCTTCGCATAGGAAGCAATAAGCTTACAGGAAGCATACCTCCA

Fln Alignment:

sp_v1.1_unigene47951___LNSSSNVLTGRIPPELSFIKGLKILNLNTNSLTGRIPEEFHXXXXXXXXXXXVNRLTGPIPQWISNLTSLEIFTAYENSFNGSIPQNLGLNSNLEVLNLHSNKLVGSIPESIFASGQLQVLILTMNSLDGSLPRSVGKCKGLSNLRIGSNKLTGSIPP
B8LRM4_______________LNLSSNALTGRIPPELSSIKGLKILNLNTNGLNGGIPEEFHRLESLQELQLSVNHLTGPIPQWISNLTSLEIFTAYENSFNGAIPQNLGLNSNLEVLNLHSNKLVGSIPESIFASGQLQVLILTMNSLDGSLPRSVGKCRGLSNLRIGSNKLTGSIPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain