SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47908

Length: 420 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene47908
GCGTATTCGCGACCCCAAGACAACCGCTCTTATTTTCGCCTCGGGCAAGATGGTCGTTACGGGTGCGAAAAGCGAAGACGACTCGCGATTGGCATCACGCAAATATGCGCGCATTGTTCAGAAGCTCGGTTTCGACGCCAAGTTTGCCGAGTTCAAGATTCAAAATATTGTTGGAAGCTGTGACGTGAAGTTCCCTATTCGCTTGGAGGGTCTTGCATACAGTCACGGGCAGTTCAGTAGTTACGAACCCGAGCTGTTCCCCGGACTCATTTATCGCATGCTCAAGCCCAAAGTTGTGCTCCTGATTTTCGTATCGGGAAAGATAGTGTTGACCGGTGCAAAGGTCAGGGAAGAGATATATACCGCGTTCAACACCATCTACACGGTGCTGTGCGAATTCAGGAACCTTGATGCCGTTTA

Ace file of the UniGene sp_v1.1_unigene47908

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transcription initiation factor TFIID-1; K03120 transcription initiation factor TFIID TATA-box-binding protein	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	tata-box binding protein	-	-	95%

Source	InterPros	Term	Type	Identity
Blast2go	TATA-box binding protein	IPR000814	-	95%
Blast2go	Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal	IPR012294	-	95%
Blast2go	Beta2-adaptin/TBP, C-terminal domain	IPR012295	-	95%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRB0

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 139 - 200

Fln protein: RIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFAEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRNLDAV

Protein Length: 140

Fln nts: GCGTATTCGCGACCCCAAGACAACCGCTCTTATTTTCGCCTCGGGCAAGATGGTCGTTACGGGTGCGAAAAGCGAAGACGACTCGCGATTGGCATCACGCAAATATGCGCGCATTGTTCAGAAGCTCGGTTTCGACGCCAAGTTTGCCGAGTTCAAGATTCAAAATATTGTTGGAAGCTGTGACGTGAAGTTCCCTATTCGCTTGGAGGGTCTTGCATACAGTCACGGGCAGTTCAGTAGTTACGAACCCGAGCTGTTCCCCGGACTCATTTATCGCATGCTCAAGCCCAAAGTTGTGCTCCTGATTTTCGTATCGGGAAAGATAGTGTTGACCGGTGCAAAGGTCAGGGAAGAGATATATACCGCGTTCAACACCATCTACACGGTGCTGTGCGAATTCAGGAACCTTGATGCCGTTTA

Fln Alignment:

sp_v1.1_unigene47908___RIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFAEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLTGAKVREEIYTAFNTIYTVLCEFRNL
C0PRB0_______________RIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAHFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain