SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47844

Length: 406 nt

UniGene Fasta

>sp_v1.1_unigene47844
CGTCGTGACCTTGGCTGTCACTCAATTCCAGAGACGGCTGAAAGTAAACAAGTGGCAGGCGGAGCTGAGTATCCGAAATGGTCTACGTAATCCCATACCATATTGGGGGGTGGGAGTCATGCCCTGTACAAATAAACCTATTATTGCCCTGGAAGAATCAATGATGCGTTCGTGGAATAATCCCCAAATTCTCTCCCATGGCCATTCTCAGAAATCTTCTTCCCTTGCTTATTGCATCCATCGTTTGTTTATCCCAGCTTGATGCCCAAGTGGATGAAATCCAAATTCTACTCACTGTAAAGGCAAATCTCCAAGACCCAACGAATGCATTGAGCAACTGGGAGAGCTCTGCTTCTTCTCCATGTCAGTGGAATGGAATCAGCTGCAATACAAACGGTTCAGTCAC

Ace file of the UniGene sp_v1.1_unigene47844

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CLL2 clavata1-like receptor S/T protein kinase protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKR9_PHYPA	-	-	4.0e-07	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	unknown [Picea sitchensis]	-	-	9.46434e-20	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	9.46434e-20	81%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1G6

Fln msg: Distance to subject end: 192 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 69 - 291

Fln protein: MAILRNLLPLLIASIVCLSQLDAQVDEIQILLTVKANLQDPTNALSNWESSASSPCQWNGISCNTNGSV

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCCAGAGACGGCTGAAAGTAAACAAGTGGCAGGCGGAGCTGAGTATCCGAAATGGTCTACGTAATCCCATACCATATTGGGGGGTGGGAGTCATGCCCTGTACAAATAAACCTATTATTGCCCTGGAAGAATCAATGATGCGTTCGTGGAATAATCCCCAAATTCTCTCCC_-_ATGGCCATTCTCAGAAATCTTCTTCCCTTGCTTATTGCATCCATCGTTTGTTTATCCCAGCTTGATGCCCAAGTGGATGAAATCCAAATTCTACTCACTGTAAAGGCAAATCTCCAAGACCCAACGAATGCATTGAGCAACTGGGAGAGCTCTGCTTCTTCTCCATGTCAGTGGAATGGAATCAGCTGCAATACAAACGGTTCAGTCAC

Fln Alignment:

sp_v1.1_unigene47844___SPMAILRNLLPLLIASIVCLSQLDAQVDEIQILLTVKANLQDPTNALSNWESSASSPCQWNGISCNTNGSV
A9P1G6_______________SIMAILRNLPAFLIVFLVCLSQFNSQLDEIQILLSIKSGLRDSTNAFQGWESSAASPCKWNGITCNTAGSV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain