SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47813

Length: 511 nt

Origin of reads: Biogeco_2

UniGene Fasta

>sp_v1.1_unigene47813
AATATGTTACGATGTATCTTTCGTGCACCCATGTCTTTCTTTGATTCAACACCAACTGGTCGAATCTTGATCCGTGTATCAATAGATCAAAGCGTTGTAGACTTAGATATCCCATTCAGACTTGGTGGTTTTGCTGCCACTACCATACAACTTCTTGGCATAATTATAGTTATGTCAAATGTCACCTGGCAGGTTCTGGTTATATTTGTACCCATGGCTATGGCTTGTTTATGGATGCAGAAATACTACATGGCATCGTCTAGAGAACTTGTTCGAATTGTAGGCATCCAGAAAGCTCCAATTATCCATCATTTTGGAGAGTCAATTGCTGGAGCAGCAACCATCAGAGGTTTTGGCCAGGAACAACGGTTCAGGAAAAGGATTTTGCATTTTTTCGACTGTTATGCTCGTCCATTCTTCTACAGTTTTGCAGCCATTGAATGGCTTTGCTTACGGATGGAGTTATTATCAACTTTTGTCTTTGCTTTCTCAATGGCTCTCCTTGTCAGCT

Ace file of the UniGene sp_v1.1_unigene47813

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative (EC:1.3.1.74)	-	-	84%
FL-Next	sp=ABC transporter C family member 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	81%
Blast2go	multidrug resistance protein abc transporter family	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	86%
Blast2go	cellular potassium ion homeostasis	GO:0030007	Biological Process	86%
Blast2go	sulfonylurea receptor activity	GO:0008281	Molecular Function	86%
Blast2go	catalytic activity	GO:0003824	Molecular Function	86%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	ABC transporter, transmembrane domain	IPR001140	-	86%
Blast2go	ABC transporter, transmembrane domain, type 1	IPR011527	-	86%
Blast2go	ABC transporter, integral membrane type 1	IPR017940	-	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7GB25

Fln msg: Distance to subject end: 320 aas, your sequence is shorter than subject: 170 - 1514

Fln protein: NMLRCIFRAPMSFFDSTPTGRILIRVSIDQSVVDLDIPFRLGGFAATTIQLLGIIIVMSNVTWQVLVIFVPMAMACLWMQKYYMASSRELVRIVGIQKAPIIHHFGESIAGAATIRGFGQEQRFRKRILHFFDCYARPFFYSFAAIEWLCLRMELLSTFVFAFSMALLVS

Protein Length: 171

Fln nts: AATATGTTACGATGTATCTTTCGTGCACCCATGTCTTTCTTTGATTCAACACCAACTGGTCGAATCTTGATCCGTGTATCAATAGATCAAAGCGTTGTAGACTTAGATATCCCATTCAGACTTGGTGGTTTTGCTGCCACTACCATACAACTTCTTGGCATAATTATAGTTATGTCAAATGTCACCTGGCAGGTTCTGGTTATATTTGTACCCATGGCTATGGCTTGTTTATGGATGCAGAAATACTACATGGCATCGTCTAGAGAACTTGTTCGAATTGTAGGCATCCAGAAAGCTCCAATTATCCATCATTTTGGAGAGTCAATTGCTGGAGCAGCAACCATCAGAGGTTTTGGCCAGGAACAACGGTTCAGGAAAAGGATTTTGCATTTTTTCGACTGTTATGCTCGTCCATTCTTCTACAGTTTTGCAGCCATTGAATGGCTTTGCTTACGGATGGAGTTATTATCAACTTTTGTCTTTGCTTTCTCAATGGCTCTCCTTGTCAGCT

Fln Alignment:

sp_v1.1_unigene47813___NMLRCIFRAPMSFFDSTPTGRILIRVSIDQSVVDLDIPFRLGGFAATTIQLLGIIIVMSNVTWQVLVIFVPMAMACLWMQKYYMASSRELVRIVGIQKAPIIHHFGESIAGAATIRGFGQEQRFRKRILHFFDCYARPFFYSFAAIEWLCLRMELLSTFVFAFSMALLVS
Q7GB25_______________NMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELLSTLVFAFCMVLLVS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
372		66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain