SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47773

Length: 370 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene47773
AACTCATTGTGGTATCCTATTTGCTGCAATTGCCACACAACTATTATACGCTAGCCAGCTTTACTGATTTCCAAGCTCAAGCTTTGCAGGTCGAGGATGCTGTGAAGGTTGCACAAAGGGTTATTGTAGGGGTACATCAAGAATGGAAGGAGTCACAAGTTTTAATGCATGAAGTAGGATTAAAACGCCGATTCACGAATTTCAAGTCATGGCTTTGGGCCTTTGCTACCGTGAGTATCTTCCCGTACATTGCATGTCCCATGGGATGATGCTGGTTGCTTGTGTCCAGTGGGGGATTTGTTTAATTATGCTGCTCCTGGAATTAATATGGAAGTTGTTGAAGATACTGTTGCTGAGAAAGAAGTCTGTG

Ace file of the UniGene sp_v1.1_unigene47773 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SDG40; SDG40 (SET DOMAIN GROUP 40)	-	-	9.0e-26	47%
FL-Next	sp=Protein SET DOMAIN GROUP 40; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%
Blast2go	set domain-containing protein	-	-	5.05979e-28	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6NQJ8

Fln msg: Overlapping hits, possible frame ERROR between 236 and 235, Distance to subject end: 257 aas, your sequence is shorter than subject: 123 - 491

Fln protein: LIVVSYLLQLPHNYYTLASFTDFQAQALQVEDAVKVAQRVIVGVHQEWKESQVLMHEVGLKRRFTNFKSWLWAFATVxxSSRTLHVPWDDAGCLCPVGDLFNYAAPGINMEVVEDTVAEKEVC

Protein Length: 124

Fln nts: AACTCATTGTGGTATCCTATTTGCTGCAATTGCCACACAACTATTATACGCTAGCCAGCTTTACTGATTTCCAAGCTCAAGCTTTGCAGGTCGAGGATGCTGTGAAGGTTGCACAAAGGGTTATTGTAGGGGTACATCAAGAATGGAAGGAGTCACAAGTTTTAATGCATGAAGTAGGATTAAAACGCCGATTCACGAATTTCAAGTCATGGCTTTGGGCCTTTGCTACCGTGxxxxxxTCTTCCCGTACATTGCATGTCCCATGGGATGATGCTGGTTGCTTGTGTCCAGTGGGGGATTTGTTTAATTATGCTGCTCCTGGAATTAATATGGAAGTTGTTGAAGATACTGTTGCTGAGAAAGAAGTCTGTG

Fln Alignment:

sp_v1.1_unigene47773___YLLQLPHNYYTLASFTDFQAQALQVEDAVKVAQRVIVGVHQEWKESQVLMHEVGLKRRFTNFKSWLWAFATxxSRTLHVPWDDAGCLCPVGDLFNYAAPG
Q6NQJ8_______________YLFHIPRDYDLLATFGNFEKQALQVEDAVWATEKATAKCQSEWKEAGSLMKELELKPKFRSFQAWLWASATxxSRTLHVPWDSAGCLCPVGDLFNYDAPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain