SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47725

Length: 455 nt

UniGene Fasta

>sp_v1.1_unigene47725
CAATGTGGCAACTTACAAGACGCTTATGATATCGCTATCTCACAGAGGTAGACTATCACAGGTTTTTCAGCTCTGGATTAATCATATGTCTCAGAGATCTGGTATAAATAATCAAGACTTTTGCACTATTCAGTTGATCCAGAAATTATTTGAAGAAGGAAATTTAGTTGAAGCTTTCAGAACTGCGGTGAAGATGGATATGATGCAAGATGCTGCAGATTCTGGAGCATATTGTATTATAATAATTGCTCTATACAAAGCTGGGAGATTGGATGATGCATTGAAACTTTTAGGTATTGTTCAAGAACATAATCTCGATCTCACAGCATCTACATATGTGTTGCTTCTTACTGGTCTTTGTGAGGATGGCCGATTAACAGTGGCTGTAGAATTGTTTAGGGAATCATTGGAGAGAGGTATTTTGTTAAAGTCTCCAGTGTGCAATAAAATTCTTA

Ace file of the UniGene sp_v1.1_unigene47725

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	1.0e-15	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Blast2go	pentatricopeptide repeat-containing protein	-	-	6.11106e-19	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	6.11106e-19	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN20

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 151 - 420

Fln protein: NVATYKTLMISLSHRGRLSQVFQLWINHMSQRSGINNQDFCTIQLIQKLFEEGNLVEAFRTAVKMDMMQDAADSGAYCIIIIALYKAGRLDDALKLLGIVQEHNLDLTASTYVLLLTGLCEDGRLTVAVELFRESLERGILLKSPVCNKIL

Protein Length: 152

Fln nts: CAATGTGGCAACTTACAAGACGCTTATGATATCGCTATCTCACAGAGGTAGACTATCACAGGTTTTTCAGCTCTGGATTAATCATATGTCTCAGAGATCTGGTATAAATAATCAAGACTTTTGCACTATTCAGTTGATCCAGAAATTATTTGAAGAAGGAAATTTAGTTGAAGCTTTCAGAACTGCGGTGAAGATGGATATGATGCAAGATGCTGCAGATTCTGGAGCATATTGTATTATAATAATTGCTCTATACAAAGCTGGGAGATTGGATGATGCATTGAAACTTTTAGGTATTGTTCAAGAACATAATCTCGATCTCACAGCATCTACATATGTGTTGCTTCTTACTGGTCTTTGTGAGGATGGCCGATTAACAGTGGCTGTAGAATTGTTTAGGGAATCATTGGAGAGAGGTATTTTGTTAAAGTCTCCAGTGTGCAATAAAATTCTTA

Fln Alignment:

sp_v1.1_unigene47725___NVATYKTLMISLSHRGRLSQVFQLWINHMSQR--SGINNQDFCTIQLIQKLFEEGNLVEAFRTAVKMDMMQDAADSGAYCIIIIALYKAGRLDDALKLLGIVQEHNLDLTASTYVLLLTGLCEDGRLTVAVELFRESLERGILLKS
B8LN20_______________NVVTYTQLIHGLCQKG----LFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain