SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47721

Length: 740 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene47721 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ELF6; ELF6 (EARLY FLOWERING 6); transcription factor	-	-	64%
FL-Next	sp=Probable lysine-specific demethylase ELF6; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	nucleic acid binding	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	histone H3-K9 demethylation	GO:0033169	Biological Process	80%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	80%
Blast2go	negative regulation of long-day photoperiodism, flowering	GO:0048579	Biological Process	80%
Blast2go	negative regulation of histone acetylation	GO:0035067	Biological Process	80%
Blast2go	negative regulation of short-day photoperiodism, flowering	GO:0048577	Biological Process	80%
Blast2go	leaf development	GO:0048366	Biological Process	80%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	JmjC domain	IPR003347	-	0.0	80%
Blast2go	Transcription factor jumonji	IPR013129	-	0.0	80%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
248		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain