SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47683

Length: 320 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene47683
AACGGGCGTGTTGCTATGCTCGCCGCAGCCGGGATCCTGTTCACAGAGGCGGTGGGCCGCGGACCCTGGTGGACTGCCCCTGAGAGGGGTATCTACCCTCTGCCATACTGGACCGGCATCATCGTCTTCCACGCTGTCTACGCCGGATTCGAGCTCAAGAGGTTCCAGAACTTCCAGAAGTACGGCGAGACTGGCCTGCTGAACTCCGTGCCGTTTGACCCCCTGGGCCTCAACAGAGACAAGAGGCGCCAGAACGAGGTGAGGAACGGCCGCCTGGCCATGCTGGCCAACCTGGGCTTCTGGAGCCAGGCCGCCACCAC

Ace file of the UniGene sp_v1.1_unigene47683

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Light-harvesting protein of photosystem I n=1 Tax=Chlamydomonas reinhardtii RepID=A8IKC8_CHLRE	-	-	7.0e-19	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	light-harvesting protein of photosystem i	-	-	1.38336e-18	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Chlorophyll A-B binding protein, plant	IPR001344	-	1.38336e-18	58%
Blast2go	Chlorophyll A-B binding protein	IPR022796	-	1.38336e-18	58%
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	1.38336e-18	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRY9

Fln msg: Distance to subject end: 33 aas, your sequence is shorter than subject: 106 - 247

Fln protein: NGRVAMLAAAGILFTEAVGRGPWWTAPERGIYPLPYWTGIIVFHAVYAGFELKRFQNFQKYGETGLLNSVPFDPLGLNRDKRRQNEVRNGRLAMLANLGFWSQAAT

Protein Length: 107

Fln nts: AACGGGCGTGTTGCTATGCTCGCCGCAGCCGGGATCCTGTTCACAGAGGCGGTGGGCCGCGGACCCTGGTGGACTGCCCCTGAGAGGGGTATCTACCCTCTGCCATACTGGACCGGCATCATCGTCTTCCACGCTGTCTACGCCGGATTCGAGCTCAAGAGGTTCCAGAACTTCCAGAAGTACGGCGAGACTGGCCTGCTGAACTCCGTGCCGTTTGACCCCCTGGGCCTCAACAGAGACAAGAGGCGCCAGAACGAGGTGAGGAACGGCCGCCTGGCCATGCTGGCCAACCTGGGCTTCTGGAGCCAGGCCGCCACCAC

Fln Alignment:

sp_v1.1_unigene47683___RVAMLAAAGILFTEAVGRGPWWTAPERGIYP--LPYWTGIIV----FHAVYAGFELKR-FQNFQKYGETGLLNSV----PFDPLGLNRD-----KRRQNEVRNGRLAMLANLGFWSQAA
A9NRY9_______________RWAMLAVPGVLIPEALGLGNWVEAQKWAAIPGGQATYLGVPVPWGYFPIILSIFFLKMAFAESQRNGEPDLEKRKYPGGAFDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain