SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47679

Length: 1002 nt

Origin of reads: Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene47679

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative CC-NBS-LRR protein (Fragment) n=1 Tax=Pinus monticola RepID=A5WZ02_PINMO	-	-	1.0e-38	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	cc-nbs-lrr protein	-	-	2.49561e-38	49%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Disease resistance protein	IPR000767	-	2.49561e-38	49%
Blast2go	NB-ARC	IPR002182	-	2.49561e-38	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS43

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 463 aas, your sequence is shorter than subject: 302 - 932

Fln protein: QFFCNHLPISCFNRILHPRNPLSSDRGELFAALEKLVIDPGLSRVGVVGKGGSGKTLLLKAVFNSEKVRNVFSDGLMLWLTVSQFPSFKSLREELCQQIAIQTNAQELVNSMNPEGLKIWMNQTLQSKKFALFLDDLWGEGAKLLEELCVPSLTDPADSKIVVSSRDHSALREMGVNAERSTIVMDDLIKDDSWRLFGHHAFPYNNGKRPTSIKERTARLVCAHCKGLPLAIKAVGRAMAGITDPREWELAVRRLPSTNSQDLRQALYDPLRWSYDALARYDVNLQLCFLYLSAFPEDEVI*

Protein Length: 303

Fln nts: AGCAGTTCTTCTGCAACCACCTCCCAATCTCTTGCTTCAACAGGATTCTTCATCCCCGAAACCCTTTATCGTCGGACAGGGGAGAACTTTTTGCAGCACTGGAGAAGCTAGTGATCGATCCAGGGCTCTCGCGCGTTGGCGTGGTAGGAAAAGGTGGATCCGGGAAGACTCTGCTTCTCAAGGCAGTCTTCAATAGTGAAAAGGTGCGGAATGTCTTTAGCGATGGCTTAATGCTTTGGCTTACTGTTTCACAGTTCCCGTCTTTTAAAAGTCTTAGAGAAGAACTCTGTCAACAGATAGCCATCCAAACAAATGCACAGGAACTGGTAAATAGTATGAACCCGGAAGGTCTAAAAATCTGGATGAATCAGACTCTGCAGTCCAAGAAATTTGCCCTGTTCTTAGATGATTTATGGGGAGAGGGTGCAAAACTGCTGGAAGAATTGTGTGTACCCTCGTTAACTGACCCCgCCGACTCCAAAATTGTTGTGAGTTCaAGGGATCACAGTGCATTGCGAGAGATGGGGGTTAATGCAGAGAGGTCAACAATAgTTATGGAtGATCTGATCAAAGATGATAGTTGGAGGTTATTTGGTCATCATGCTTTCCCATACAATAAcGGAAaGCgGCCAACAAGCATCaAggAGAGAACGGCCAGGCTTGTGTGTGCCCACTGCAAAGGGCTTCCCCTTGCCATCAAAGCAGTTGGCAGGGCAATGGCAGGCATTACTGATCCAAGAGAGTGGGAGTTAGCGGTgAGGaGGTTGCCAAGCACCAACAgCCAAGATCTTCGACAAGCTCTcTATGATCCgCTCAGGTGGAGTTACGACGCACTGGCCAGGTACGACGTCAACcTGCAATTGTGCTTTTTATACTTATCTGCCTTCCcAGAAGACGAGGTCATCtaGGTgAACTGGGTGATTcTcTtGTTtATAGGCGAAGGGCTCCTTGCAAGAAAGAATGGGCAAGATGAGCGCAGCCACTTCCCATTTGAGGTGGGGA

Fln Alignment:

sp_v1.1_unigene47679___VFNSEKVRNVFSDGLMLWLTVSQFPSFKSLREELCQQIAIQTNAQELVNSMNPEGL------KIWMNQTLQSKKFALFLDDLWGEGAKLLEELCVPSLTDPADSKIVVSSRDHSALREMGVNAERSTIVMDDLIKDDSWRLFGHHAFPYNNGKRPTSIKERTARLVCAHCKGLPLAIKAVGRAMAGITDPREWELAVRRLPSTNS-----QDLRQALYDPLRWSYDALARYDVNLQLCFLYLSAFPEDEVI*VNWVILLFIGEGLL
B8LS43_______________VYNAYKKGKLFE--AVIWTSVSQIYNIADLQSNIAEEINLKLGS----TTSNPESSSAADMRKRKLSACLREKKFLLILDDVW-TALPLEEELGIPVGNDKG-SRVVISTRSFDVVRRM--EADDFSIEIQPLSRDEGWRLFCRGAFKADTV--PTKDIEDVATRIAGECNGFPLAINVVAAAMKSNTSVNDWTLAFNQMKNMDPGFLEYSSIAQGLYQPLKLSYDCLP--DSNFKICFLYCATFPENRRIYVNALVEKWIAEGLV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
855		33	66		1.0
897		33	66		0.997452
915	33			66	0.997452
925			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain