SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47678

Length: 438 nt

UniGene Fasta

>sp_v1.1_unigene47678
ATGGGAGCTTTGCGCAAGTGGAAGGCTGGAAGAAGCTAGGGAACTAATAAATGAAATTTTATTTAAGGTGGGCAATCCAAGTCTCATGAGTCACAGTGTGATGATAGATAATCTCAGCATGGCAGGCAGGGTTGGAGAAGCTAGGGAGTTGTTGAACGATATGTTGAAAAAAGGTTATAGGCCTAGAGTTATTACATATAACAGGTTGGTTAGTGGGCTTTGCAAAGAAGGTCGGTCATATGAGGCCACCAAGATGTTAGACTTGATGTTAGACAATAACTGCCTTCCAAATGTTGTGACTTATAATATCCTGATTGATGGATTCTGCAAAGAATGCAAAGTCCACAAAGGAGTTGAATATCTGGATATTATGTCACAATGTGGCTGTCTTCCTAATGCTATAACTTATCAAACTCTGGTTGATGCTTTGTGTGCAGA

Ace file of the UniGene sp_v1.1_unigene47678

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	4.0e-27	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.58839e-27	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	1.58839e-27	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	1.58839e-27	64%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: STOP codon was not found. Distance to subject end: 44 aas, your sequence is shorter than subject: 145 - 486

Fln protein: WELCASGRLEEARELINEILFKVGNPSLMSHSVMIDNLSMAGRVGEARELLNDMLKKGYRPRVITYNRLVSGLCKEGRSYEATKMLDLMLDNNCLPNVVTYNILIDGFCKECKVHKGVEYLDIMSQCGCLPNAITYQTLVDALCA

Protein Length: 146

Fln nts: ATGGGAGCTTTGCGCAAGTGGAAGGCTGGAAGAAGCTAGGGAACTAATAAATGAAATTTTATTTAAGGTGGGCAATCCAAGTCTCATGAGTCACAGTGTGATGATAGATAATCTCAGCATGGCAGGCAGGGTTGGAGAAGCTAGGGAGTTGTTGAACGATATGTTGAAAAAAGGTTATAGGCCTAGAGTTATTACATATAACAGGTTGGTTAGTGGGCTTTGCAAAGAAGGTCGGTCATATGAGGCCACCAAGATGTTAGACTTGATGTTAGACAATAACTGCCTTCCAAATGTTGTGACTTATAATATCCTGATTGATGGATTCTGCAAAGAATGCAAAGTCCACAAAGGAGTTGAATATCTGGATATTATGTCACAATGTGGCTGTCTTCCTAATGCTATAACTTATCAAACTCTGGTTGATGCTTTGTGTGCAGA

Fln Alignment:

sp_v1.1_unigene47678___LCASGRLEEARELINEILFKVGNPSLMSHSVMIDNLSMAGRVGEARELLNDMLKKGYRPRVITYNRLVSGLCKEGRSYEATKMLDLMLDNN
D5AAH0_______________LCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMRICEDSQT-EARELVDKLSEDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain