SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47673

Length: 367 nt

UniGene Fasta

>sp_v1.1_unigene47673
CGTCGTGACCTTGGCGTCACTCAACTAGGGTTTCTTCAATTGGGCTTCCGAGCAGCCTAATTACATGCACAATCATGTTAGTTACGGAGCTATGATTCAGTTATTAGGTCCCACAAAGAAATTTGATGCCCTAAACAATCTACTCGAGGAAATAAGGAAGTCTGGGAGTCCAATCTCTCCGCATGCATTTAATTTTTTGCTGAGAAGCTATATCAGAAGCGGGAGAGTTCAAGATGCAATGCGAGCATATAATCATATGGGTAACCTGGGGCTGAAACCAGATGCGTATGCATTTAGTTGGCTTATTGAGGTTCTCATTCGGGCAAACCGTCCAGACTTGGCCAGAAGTGTCTACTCTGATCTTCGG

Ace file of the UniGene sp_v1.1_unigene47673

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SCV6_RICCO	-	-	1.0e-14	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	pentatricopeptide repeat-containing protein	-	-	2.01276e-14	54%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	2.01276e-14	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL58

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 385 aas, your sequence is shorter than subject: 122 - 700

Fln protein: VVTLASLN*GFFNWASEQPNYMHNHVSYGAMIQLLGPTKKFDALNNLLEEIRKSGSPISPHAFNFLLRSYIRSGRVQDAMRAYNHMGNLGLKPDAYAFSWLIEVLIRANRPDLARSVYSDLR

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCGTCACTCAACTAGGGTTTCTTCAATTGGGCTTCCGAGCAGCCTAATTACATGCACAATCATGTTAGTTACGGAGCTATGATTCAGTTATTAGGTCCCACAAAGAAATTTGATGCCCTAAACAATCTACTCGAGGAAATAAGGAAGTCTGGGAGTCCAATCTCTCCGCATGCATTTAATTTTTTGCTGAGAAGCTATATCAGAAGCGGGAGAGTTCAAGATGCAATGCGAGCATATAATCATATGGGTAACCTGGGGCTGAAACCAGATGCGTATGCATTTAGTTGGCTTATTGAGGTTCTCATTCGGGCAAACCGTCCAGACTTGGCCAGAAGTGTCTACTCTGATCTTCGG

Fln Alignment:

sp_v1.1_unigene47673___FFNWASEQPNYMHNHVSYGAMIQLLGPTKKFDALNNLLEEIRKSGSPISPHAFNFLLRSYIRSGRVQDAMRAYNHMGNLGLKPDAY--AFSWLIEVLIRANRPDLARSVYSDL
B8LL58_______________FFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain