SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47662

Length: 482 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene47662
TGAAGCGTCGAGACCATGGCTCTCACCATTTCATCGACACAGAGAACTATAGAGCTAGAGGGAATCATAGTGAAATAGCCCTGTAATAGTACAGTATAGTATGCAGTTTTGAGGATGGATATTGAGATTAGAAGCAGTGTTGAAGCATTGGTTGCCATTTTAGTTGTTCTGTTTGGAATAATAGTTGTCAATCTCTTTAGAGATCTCATATGGAGGCCTTATGTGTTCCACAAGGCCTATACAGCCCAAGGGATAAGAGGTCCACCTTACAAGATACTCATCGGGAGCGGGCCAGAGCAGACACAGCTTCTCAGGGAGGCTCATGCAGAGCCTATGCAGAATATTTCTCATGACATTGTTCCTAGAGTCATACCACACTACCATAAGTGGTGTCAGATTTATGGAGAGACCTTTTTCTACTGGTATGGAACCCGTTCAAGGCTGTACATTGCTGATCCAGATTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene47662 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CYP709B1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding	-	-	2.0e-20	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	cytochrome p450	-	-	0.0	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	64%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	64%
Blast2go	Methane metabolism	00680	64%
Blast2go	Phenylpropanoid biosynthesis	00940	64%
Blast2go	Biosynthesis of phenylpropanoids	01061	64%
Blast2go	Metabolic pathways	01100	64%
Blast2go	Biosynthesis of secondary metabolites	01110	64%

Source	GOs	Term	Type	Identity
Blast2go	brassinosteroid homeostasis	GO:0010268	Biological Process	64%
Blast2go	brassinosteroid metabolic process	GO:0016131	Biological Process	64%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	64%
Blast2go	response to light stimulus	GO:0009416	Biological Process	64%
Blast2go	protein binding	GO:0005515	Molecular Function	64%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	64%
Blast2go	steroid hydroxylase activity	GO:0008395	Molecular Function	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	0.0	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKI7

Fln msg: Distance to subject end: 407 aas, your sequence is shorter than subject: 122 - 530

Fln protein: MDIEIRSSVEALVAILVVLFGIIVVNLFRDLIWRPYVFHKAYTAQGIRGPPYKILIGSGPEQTQLLREAHAEPMQNISHDIVPRVIPHYHKWCQIYGETFFYWYGTRSRLYIADPDFAVSDR

Protein Length: 123

Fln nts: TGAAGCGTCGAGACCATGGCTCTCACCATTTCATCGACACAGAGAACTATAGAGCTAGAGGGAATCATAGTGAAATAGCCCTGTAATAGTACAGTATAGTATGCAGTTTTGAGG_-_ATGGATATTGAGATTAGAAGCAGTGTTGAAGCATTGGTTGCCATTTTAGTTGTTCTGTTTGGAATAATAGTTGTCAATCTCTTTAGAGATCTCATATGGAGGCCTTATGTGTTCCACAAGGCCTATACAGCCCAAGGGATAAGAGGTCCACCTTACAAGATACTCATCGGGAGCGGGCCAGAGCAGACACAGCTTCTCAGGGAGGCTCATGCAGAGCCTATGCAGAATATTTCTCATGACATTGTTCCTAGAGTCATACCACACTACCATAAGTGGTGTCAGATTTATGGAGAGACCTTTTTCTACTGGTATGGAACCCGTTCAAGGCTGTACATTGCTGATCCAGATTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene47662___MDIEIRSSVEALVAILVVLFGIIVVNLFRDLIWRPYVFHKAYTAQGIRGPPYKILIGSGPEQTQLLREAHAEPMQNISHDIVPRVIPHYHKWCQIYGETFFYWYGTRSRLYIADPD
B8LKI7_______________MDCVIRSSVEAFVAILVVLFGSIVVKLFRDLIWRPYAFHKAYAGQGIRGTPYRILAGSVPEYTELLREAHAQPMQNISHDIVPRITPEYHKWCQIYGEPFFYWYGIHSRLYISEPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain