SustainPineDB

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Assembly info
Unigenes
SNPs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47579

Length: 541 nt

Origin of reads: Biogeco_1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene47579
ATGGGGGACATTCATTGGAAGGAAGGCGACTATAAATGACAGTTTCTTGGCCTTGAAGCAAACTTTCATTGTTAAATTTGTTTCGAATTTTCGTCGCAGAGCTCGGATTAAAGCGCTCTGCAAAGGCCGGACATTTGTTTGCAATCCAAGATGCATCTTTACAACGCCTGGTTGCCTCCTCCGGTGGCGGAGCTCGCAGTTAAAGAAAAGGACGCGTTTACGGAAGTAGTGAACACAGTGAAAGATGCATGGAAGCCTGACGATCCTTCCTCTGCATATGCCACTCTCAAGTGGATTCCGATCTTGCACAATTTTATAAAAGCAAAAAGTGAAATTGCTTTAGAAGATGTGAAAGTCTTAGTTTTGATTGGGCTGGATCTGCTTCTTCGTTTACAAGATCACCTTGATGTCCAGGTGCGATGGGGCAATCTCATGGTGAGATTATTGAAAAAATATGGAAAGAAACTAGATATTACTATCCAGTGGCGACCATTATATGATCTTTTGATACAAACACACTTCACAAGGCATCAGAGTAGCT

Ace file of the UniGene sp_v1.1_unigene47579 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	binding; K06699 proteasome activator subunit 4	-	-	5.0e-32	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	62%
Blast2go	binding protein	-	-	5.29425e-36	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7UAP4

Fln msg: Distance to subject end: 1678 aas, your sequence is shorter than subject: 130 - 1808

Fln protein: MHLYNAWLPPPVAELAVKEKDAFTEVVNTVKDAWKPDDPSSAYATLKWIPILHNFIKAKSEIALEDVKVLVLIGLDLLLRLQDHLDVQVRWGNLMVRLLKKYGKKLDITIQWRPLYDLLIQTHFTRHQSS

Protein Length: 131

Fln nts: ATGGGGGACATTCATTGGAAGGAAGGCGACTATAAATGACAGTTTCTTGGCCTTGAAGCAAACTTTCATTGTTAAATTTGTTTCGAATTTTCGTCGCAGAGCTCGGATTAAAGCGCTCTGCAAAGGCCGGACATTTGTTTGCAATCCAAG_-_ATGCATCTTTACAACGCCTGGTTGCCTCCTCCGGTGGCGGAGCTCGCAGTTAAAGAAAAGGACGCGTTTACGGAAGTAGTGAACACAGTGAAAGATGCATGGAAGCCTGACGATCCTTCCTCTGCATATGCCACTCTCAAGTGGATTCCGATCTTGCACAATTTTATAAAAGCAAAAAGTGAAATTGCTTTAGAAGATGTGAAAGTCTTAGTTTTGATTGGGCTGGATCTGCTTCTTCGTTTACAAGATCACCTTGATGTCCAGGTGCGATGGGGCAATCTCATGGTGAGATTATTGAAAAAATATGGAAAGAAACTAGATATTACTATCCAGTGGCGACCATTATATGATCTTTTGATACAAACACACTTCACAAGGCATCAGAGTAGCT

Fln Alignment:

sp_v1.1_unigene47579___MHLYNAWLPPPVAELAVKEKDAFTEVVNTVKDAWKPDDPSSAYATLKWIPILHNFIKAKSEIALEXXXXXXXXXXXXXXXXXXXXXVQVRWGNLMVRLLKKYGKKLDITIQWRPLYDLLIQTHFTRH
D7UAP4_______________MHLYNAWLPPPVAEATKGEKEAFGRVVAAVKEAWRPEDPESVYSTLKWISVIDLFIKAKSEVCLEDVGALTEIGLELFHKSHNKLYAQVRWGNILVRLLNKYRKKLALKVQWRPFYDTLIQTHFTRN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
197			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain