SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47542

Length: 373 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene47542
CGTCGTGACCTTGGCTGTCACTCAACCAGAATTTGCGTTAGCAGCATAAAGATGGCGTACACTAATATGGGGAGAATGATGTCGATCATGAGGTTGTTATTGGCCCTCACCGCAGTGGCGATAATGAGTTCTTTGTGTTGTTATGTTTCTGCACAACAGGGAGTCGCATCCATCATAAGTGAAGATGTCTTCAATCAATTTCTGAAGCACAGAAACGACGCCGCATGCCCGGCAAAAGGTTTCTACACCTACACCGCCTTCACTGCGGCAGCTAATAGTTTCCCAGACTTCGGCAACAACGGCGATCTAGAGAGCCGCAAAAGAGAGCTCGCGGCTTTCTTTGGTCAAACTTCGCAGGAAACCACAGGCGGGT

Ace file of the UniGene sp_v1.1_unigene47542

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	class I chitinase, putative (EC:3.2.1.14)	-	-	9.0e-15	55%
FL-Next	tr=Pschi4; Pinus strobus (Eastern white pine).	-	-	0.0	89%
Blast2go	basic endochitinase-like protein	-	-	5.39805e-39	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 19, catalytic	IPR000726	-	5.39805e-39	82%
Blast2go	Lysozyme-like domain	IPR023346	-	5.39805e-39	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: O04276

Fln msg: Distance to subject end: 159 aas, your sequence is shorter than subject: 107 - 265

Fln protein: MAYTNMGRMMSIMRLLLALTAVAIMSSLCCYVSAQQGVASIISEDVFNQFLKHRNDAACPAKGFYTYTAFTAAANSFPDFGNNGDLESRKRELAAFFGQTSQETTGG

Protein Length: 108

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCAGAATTTGCGTTAGCAGCATAAAG_-_ATGGCGTACACTAATATGGGGAGAATGATGTCGATCATGAGGTTGTTATTGGCCCTCACCGCAGTGGCGATAATGAGTTCTTTGTGTTGTTATGTTTCTGCACAACAGGGAGTCGCATCCATCATAAGTGAAGATGTCTTCAATCAATTTCTGAAGCACAGAAACGACGCCGCATGCCCGGCAAAAGGTTTCTACACCTACACCGCCTTCACTGCGGCAGCTAATAGTTTCCCAGACTTCGGCAACAACGGCGATCTAGAGAGCCGCAAAAGAGAGCTCGCGGCTTTCTTTGGTCAAACTTCGCAGGAAACCACAGGCGGGT

Fln Alignment:

sp_v1.1_unigene47542___MAYTNMGRMMSIMRLLLALTAVAIMSSLCCYVSAQQGVASIISEDVFNQFLKHRNDAACPAKGXXXXXXXXXXXNSFPDFGNNGDLESRKRELAAFFGQTSQETTGG
O04276_______________MAYTNMKRMMS-MRLLLALTAVAIMSSLCCYVSAQQGVASIISEDVFHQFLKHRNDDACSAKGFYTYSAFIAAANSFPDFGNIGDQDSRKRELAAFFGHTSQETTGG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
286		66		33	0.997453

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain