SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47456

Length: 274 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene47456
GTGGCCCTTCACCAATGCATTCATGTTGGTGTATTTAGATGACATCTTGATCTTCAGCCAGAATTGGGAAGAGAACCTCCACCATATTCAACAGGTCCTTCAAACCCTTCGACAACACAAGCTGTATGCTAACTTGGAGAAATGCACCTTTGGCCTGAACCAAGTTCAATATCTAGGGTACATCATTGATGAGCAGGGTGTACACATGGACCCATCCAAGATACAAGTCATTCGGGATTGGCCAGCCCCAACCATTCTAACAGAGCTCCGCAGC

Ace file of the UniGene sp_v1.1_unigene47456 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative reverse transcriptase n=1 Tax=Petunia x hybrida RepID=Q6VPE7_PETHY	-	-	3.0e-23	51%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	46%
Blast2go	retrotransposable element tf2 155 kda protein type 1-like	-	-	5.33428e-23	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Reverse transcriptase	IPR000477	-	5.33428e-23	74%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: Distance to subject end: 90 aas, your sequence is shorter than subject: 84 - 158

Fln protein: MLVYLDDILIFSQNWEENLHHIQQVLQTLRQHKLYANLEKCTFGLNQVQYLGYIIDEQGVHMDPSKIQVIRDWPAPTILTELRS

Protein Length: 85

Fln nts: GTGGCCCTTCACCAATGCATTC_-_ATGTTGGTGTATTTAGATGACATCTTGATCTTCAGCCAGAATTGGGAAGAGAACCTCCACCATATTCAACAGGTCCTTCAAACCCTTCGACAACACAAGCTGTATGCTAACTTGGAGAAATGCACCTTTGGCCTGAACCAAGTTCAATATCTAGGGTACATCATTGATGAGCAGGGTGTACACATGGACCCATCCAAGATACAAGTCATTCGGGATTGGCCAGCCCCAACCATTCTAACAGAGCTCCGCAGC

Fln Alignment:

sp_v1.1_unigene47456___LHHIQQVLQTLRQHKLYANLEKCTFGLNQVQYLG--YIIDEQGVHMDPSKIQVIRDWPAPTILTELR
P92523_______________MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain