SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47441

Length: 279 nt

UniGene Fasta

>sp_v1.1_unigene47441
GTGAAGTTTCATGGGGGTTGGACACACTTGGTGATTTTGTGATCATGAGGAGCAATGGGCAGCCTGTGTACAATTTTTGTGTTGCAGTTGATGATGCTTCCATGGGAATCTCTCATGTTATAAGGGCAGAGGAACATTTGCCAAACACATTACGGCAGGCTTTAATCTACAAAGCATTGGGGTTTTCTATGCCTTCTTTTGCACACGTGTCTCTGATCCTTGCCCCAGATCGCAGCAAACTATCAAAGCGGCATGGTGCAACGTCAGTGGGACAGTTCA

Ace file of the UniGene sp_v1.1_unigene47441

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glutamyl-tRNA synthetase 1, 2, putative (EC:6.1.1.17)	-	-	8.00141e-43	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	glutamate-trna ligase	-	-	1.82169e-44	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	1.82169e-44	93%
Blast2go	Ligases, Forming carbon-oxygen bonds, Ligases forming aminoacyl-tRNA and related compounds.	EC:6.1.1.-	-	1.82169e-44	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	translation	GO:0006412	Biological Process	1.82169e-44	93%
Blast2go	ovule development	GO:0048481	Biological Process	1.82169e-44	93%
Blast2go	tRNA aminoacylation	GO:0043039	Biological Process	1.82169e-44	93%
Blast2go	protein binding	GO:0005515	Molecular Function	1.82169e-44	93%
Blast2go	ligase activity, forming aminoacyl-tRNA and related compounds	GO:0016876	Molecular Function	1.82169e-44	93%
Blast2go	ethylene binding	GO:0051740	Molecular Function	1.82169e-44	93%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.82169e-44	93%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.82169e-44	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glutamyl/glutaminyl-tRNA synthetase, class Ib	IPR000924	-	1.82169e-44	93%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	1.82169e-44	93%
Blast2go	Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain	IPR020058	-	1.82169e-44	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPV9

Fln msg: Distance to subject end: 259 aas, your sequence is shorter than subject: 92 - 581

Fln protein: EVSWGLDTLGDFVIMRSNGQPVYNFCVAVDDASMGISHVIRAEEHLPNTLRQALIYKALGFSMPSFAHVSLILAPDRSKLSKRHGATSVGQF

Protein Length: 93

Fln nts: GTGAAGTTTCATGGGGGTTGGACACACTTGGTGATTTTGTGATCATGAGGAGCAATGGGCAGCCTGTGTACAATTTTTGTGTTGCAGTTGATGATGCTTCCATGGGAATCTCTCATGTTATAAGGGCAGAGGAACATTTGCCAAACACATTACGGCAGGCTTTAATCTACAAAGCATTGGGGTTTTCTATGCCTTCTTTTGCACACGTGTCTCTGATCCTTGCCCCAGATCGCAGCAAACTATCAAAGCGGCATGGTGCAACGTCAGTGGGACAGTTCA

Fln Alignment:

sp_v1.1_unigene47441___EVSWGLDTLGDFVIMRSNGQPVYNFCVAVDDASMGISHVIRAEEHLPNTLRQALIYKALGFSMPSFAHVSLILAPDRSKLSKRHGATSVGQF
B8LPV9_______________EVSWRLDTLGDFVIMRSNGQPVYNFCVAVDDASMGISHVIRAEEHLPNTLRQALIYNALGFSMPSFAHVSLILAPDRSKLSKRHGATSVGQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain