SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47399

Length: 327 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene47399
AGACTAGATGTGCATGCTATTCAAAGCAGTCATCAAATAATTCTGATCCAGAGCCACCTGTGTCACCACTCTTGACATCTGATCCTAAAAATGAGCGTTCTCACTCAAAGACTTTCAGTAGATCTCTCTCTCATTTTGATGAAACAAATATACAAGATAAAGATGACAGGGATTCACAAAATCTCAAACCTCCATCACTATGGAGGCTTGCGCAATTGAGCTTTCCTGAGTGGCTTTATGCTCTTCTTGGTAGCACAGGGGCTGCTATTTTTGGTTCTTTTAATCCTCTTCTTGCATACATCCTTGTCCAGATAGCTGATGCATATC

Ace file of the UniGene sp_v1.1_unigene47399 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ABC transporter (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q0WWZ2_ARATH	-	-	2.0e-34	65%
FL-Next	sp=ABC transporter B family member 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	65%
Blast2go	multidrug pheromone mdr abc transporter family	-	-	3.96162e-34	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	3.96162e-34	75%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.96162e-34	75%
Blast2go	nucleus	GO:0005634	Cellular Component	3.96162e-34	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LPT1

Fln msg: Distance to subject end: 544 aas, your sequence is shorter than subject: 108 - 1407

Fln protein: TRCACYSKQSSNNSDPEPPVSPLLTSDPKNERSHSKTFSRSLSHFDETNIQDKDDRDSQNLKPPSLWRLAQLSFPEWLYALLGSTGAAIFGSFNPLLAYILVQIADAY

Protein Length: 109

Fln nts: AGACTAGATGTGCATGCTATTCAAAGCAGTCATCAAATAATTCTGATCCAGAGCCACCTGTGTCACCACTCTTGACATCTGATCCTAAAAATGAGCGTTCTCACTCAAAGACTTTCAGTAGATCTCTCTCTCATTTTGATGAAACAAATATACAAGATAAAGATGACAGGGATTCACAAAATCTCAAACCTCCATCACTATGGAGGCTTGCGCAATTGAGCTTTCCTGAGTGGCTTTATGCTCTTCTTGGTAGCACAGGGGCTGCTATTTTTGGTTCTTTTAATCCTCTTCTTGCATACATCCTTGTCCAGATAGCTGATGCATATC

Fln Alignment:

sp_v1.1_unigene47399___CYSKQSSNNSDPEPPVSPLLTSDPKNERSHSKTFSRSLSHFDETNIQDKDDRDSQNLKPPSLWRLAQLSFPEWLYALLGSTGAAIFGSFNPLLAYILVQIADAY
Q8LPT1_______________CPQRQKSNGSDPESPISPLLISDPQNERSHSQTFSRPLGHSDDTSASVKVAKDGQHKEPPSFWRLAQLSFPEWLYAVLGSIGAAIFGSFNPLLAYVIALVVTTY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain