SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47390

Length: 408 nt

UniGene Fasta

>sp_v1.1_unigene47390
TTTGCAGGACTTACATTGGTTGATTTCGATAAGGATCCATTTTTGTTTCAACTCAGTTTGGAGAAGAGGGTGATTCCTCGGTGTAGAGTAATAAAGGCACTGAAGTCAATGGGGTTCTTGGAAACAGAGATGCATTTTCGACGCATTCTTAGGATGTCAGAAAAAAGTTTCTTAGAAATATATGTCGATTCGAATGAAAAATCCTCCGTTCTGCTAGATATTTACCGTTGCGTGAAAGATGGAAAGTTGAACATTGACATGGGTACATCCAGTGAATTAGATGTAGGGTCAACGCTAGGGACTGTGAACGACCAAGTGAAGCCTTGACAAGCGGAGAGGCAGTGTATAAGCTGTAGGAATGAGGCTAGAAGCCATAGAAAAAGTAATCAGAGGGCGTGGAGAAAGTCA

Ace file of the UniGene sp_v1.1_unigene47390

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitochondrial transcription termination factor-related / mTERF-related	-	-	9.0e-05	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	unknown [Picea sitchensis]	-	-	1.72169e-13	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochodrial transcription termination factor-related	IPR003690	-	1.72169e-13	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE2

Fln msg: your sequence is shorter than subject: 109 - 250

Fln protein: FAGLTLVDFDKDPFLFQLSLEKRVIPRCRVIKALKSMGFLETEMHFRRILRMSEKSFLEIYVDSNEKSSVLLDIYRCVKDGKLNIDMGTSSELDVGSTLGTVNDQVKP*

Protein Length: 110

Fln nts: TTTGCAGGACTTACATTGGTTGATTTCGATAAGGATCCATTTTTGTTTCAACTCAGTTTGGAGAAGAGGGTGATTCCTCGGTGTAGAGTAATAAAGGCACTGAAGTCAATGGGGTTCTTGGAAACAGAGATGCATTTTCGACGCATTCTTAGGATGTCAGAAAAAAGTTTCTTAGAAATATATGTCGATTCGAATGAAAAATCCTCCGTTCTGCTAGATATTTACCGTTGCGTGAAAGATGGAAAGTTGAACATTGACATGGGTACATCCAGTGAATTAGATGTAGGGTCAACGCTAGGGACTGTGAACGACCAAGTGAAGCCTTGA___CAAGCGGAGAGGCAGTGTATAAGCTGTAGGAATGAGGCTAGAAGCCATAGAAAAAGTAATCAGAGGGCGTGGAGAAAGTCA

Fln Alignment:

sp_v1.1_unigene47390___AGLTLVDFDKDPFLFQLSLEKRVIPRCRVIKALKSMGF-LETEMHFRRILRMSEKSFLEIYVDSN-EKSSVLLDIYRCVKDGKLNIDMGTSSE
D5AAE2_______________AGLPLTDLVKYPGLFAYSLEKRMIPRYRVLEALKSMQVQMLKRLCFPIIVTLTEKRFLEEYINSNAESSSVLHDIYNGGKDGKLIIVKETSSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain