SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47332

Length: 808 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene47332

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sodium proton exchanger (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HVQ3_POPTR	-	-	64%
FL-Next	sp=Sodium/hydrogen exchanger 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	na+ h+ antiporter	-	-	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Na+/H+ exchanger, isoforms 7/8	IPR018418	-	0.0	84%
Blast2go	Cation/H+ exchanger, CPA1 family	IPR018422	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LKW9

Fln msg: Overlapping hits, possible frame ERROR between 120 and 114, and overlapping frame ERROR between 599 and 572, Distance to subject end: 371 aas, your sequence is shorter than subject: 270 - 1146

Fln protein: GNRMHPHAISINENDQQRMHMQDTRLRLLNGVQAAYWxxxxEGRITQTAAILLMQSVDEAIDMVASHETLLDWKGLETHVQFPSYFKYLRMRFLPQKLVTIFTVERLELACYICAAFLRAHRIARRQLREFIGESEVSEAIIEESEREGEPAKQFLEDVQLTFPQVLRVVKTKQVTYSILLQLSEYVQNxxxxxxxxxxxxNELHDAVQIDLKKLLRNPPLVKMLSITEILSSHPFLGALPSNIRQSLGNSVEETMIKRRVPLYTEGSKP

Protein Length: 271

Fln nts: GGGAATCGTATGCATCCTCATGCCATATCCATAAATGAAAATGACCAACAAAGGATGCATATGCAGGATACTCGATTGCGGCTTCTGAATGGTGTTCAAGCTGCTTATTGGxxxxxxxxxxxxGAAGGACGGATAACACAAACTGCTGCCATTCTTCTTATGCAATCAGTTGACGAAGCCATTGACATGGTAGCCTCCCATGAGACTTTACTTGACTGGAAAGGATTAGAAACTCATGTCCAATTTCCAAGCTATTTTAAATACCTTCGAATGAGGTTTCTACCTCAGAAGTTGGTGACAATTTTCACTGTTGAGAGATTGGAGCTTGCTTGCTACATTTGTGCAGCATTTCTTCGTGCCCATAGAATTGCTAGAAGACAATTACGTGAATTTATTGGTGAGAGTGAGGTTTCTGAGGCTATTATTGAAGAAAGTGAGAGAGAAGGGGAGCCAGCAAAGCAGTTTCTAGAAGATGTTCAGCTTACATTCCCTCAGGTTTTGCGTGTGGTCAAAACCAAGCAAGTAACATACTCCATTTTATTACAACTTAGTGAGTATGTTCAAAATCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAATGAACTTCATGATGCCGTACAGATTGATCTGAAGAAGCTTCTGAGGAATCCTCCTTTGGTGAAGATGCTTTCTATAACTGAGATCTTAAGCAGTCACCCTTTCTTGGGAGCTTTACCTTCAAATATTCGTCAGTCTCTTGGAAACAGTGTGGAAGAGACAATGATAAAACGTAGAGTCCCACTGTATACAGAAGGCTCTAAACCT

Fln Alignment:

sp_v1.1_unigene47332___HPHAIS-INENDQQRMHMQDTRLRLLNGVQAAYWExxDEGRITQTAAILLMQSVDEAIDMVASHETLLDWKGLETHVQFPSYFKYLRMRFLPQKLVTIFTVERLELACYICAAFLRAHRIARRQLREFXXXXXXXXXXXXXXXXXXXPAKQFLEDVQLTFPQVLRVVKTKQVTYSILLQLSEYVQNLExxxxxxxxxMNELHDAVQIDLKKLLRNPPLVKMLSITEILSSHPFLGALPSNIRQSLGNSVEETMIKRRVPLYTEGSKP
Q9LKW9_______________HPHNGSKIGSLDPKSL--KDIRMRFLNGVQATYWExxDEGRISEVTANILMQSVDEALDQVST--TLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVTYFAVERLESACYISAAFLRAHTIARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVRSSFPQVLRVVKTKQVTYSVLNHLLGYIENLExxxxxxxxxIAHLHDAVQTGLKKLLRNPPIVKLPKLSDMITSHPLSVALPPAFCEPLKHSKKEPMKLRGVTLYKEGSKP

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
244	50			50	1.0
269	50		50		1.0
299		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain