SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47245

Length: 384 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene47245
AGGTTGCTCTGTGTCTGCCAACTGAGCAGAGTGCACTCACGTCGGGACATTGGTGTCAAACATGACTTTAATGAAGTGCGGAATGATTCCCCACTTTTGCTGACAAGAGGACTCTACAGAACCTCGTCAACACCTTGCTTGTCACCATCAGGGCAAAGGAGCAAAGACCGCAGTAAGCCTCTAGAGATTGTGGGTGGATCTCATGGATGTCCAAAGGTGAGGCAGTTGGTTAGACAATGCATGAAAGCTTTGGATAATGGGATTGAACCAACCCCTGCTGGCGGTGGTCTAGGAGGGGCATATTGCATTCAAAATGTAATTGGTAAAAAAATTGCCATCCTTAAACCTACAGATGAAGAGCCATTTGCACCAAACAACCCAAAT

Ace file of the UniGene sp_v1.1_unigene47245 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	inositol or phosphatidylinositol kinase, putative	-	-	6.0e-28	53%
FL-Next	sp=Probable phosphatidylinositol 4-kinase type 2-beta At1g26270; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Blast2go	phosphatidylinositol 3-and 4-kinase family protein	-	-	2.02347e-30	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	inositol or phosphatidylinositol kinase activity	GO:0004428	Molecular Function	2.02347e-30	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C671

Fln msg: Distance to subject end: 427 aas, your sequence is shorter than subject: 128 - 630

Fln protein: RLLCVCQLSRVHSRRDIGVKHDFNEVRNDSPLLLTRGLYRTSSTPCLSPSGQRSKDRSKPLEIVGGSHGCPKVRQLVRQCMKALDNGIEPTPAGGGLGGAYCIQNVIGKKIAILKPTDEEPFAPNNPN

Protein Length: 129

Fln nts: AGGTTGCTCTGTGTCTGCCAACTGAGCAGAGTGCACTCACGTCGGGACATTGGTGTCAAACATGACTTTAATGAAGTGCGGAATGATTCCCCACTTTTGCTGACAAGAGGACTCTACAGAACCTCGTCAACACCTTGCTTGTCACCATCAGGGCAAAGGAGCAAAGACCGCAGTAAGCCTCTAGAGATTGTGGGTGGATCTCATGGATGTCCAAAGGTGAGGCAGTTGGTTAGACAATGCATGAAAGCTTTGGATAATGGGATTGAACCAACCCCTGCTGGCGGTGGTCTAGGAGGGGCATATTGCATTCAAAATGTAATTGGTAAAAAAATTGCCATCCTTAAACCTACAGATGAAGAGCCATTTGCACCAAACAACCCAAAT

Fln Alignment:

sp_v1.1_unigene47245___DIGVKHDFNEVRNDSPLLLTRG-LYRTSSTPCLSPSG---QRSKDRSKPLEIVGGSHGCPKVRQLVRQCMKALDNGIEPTPAGGGLGGAYCIQNVIGKKIAILKPTDEEPFAPNNP
Q9C671_______________DLVLKNDLTAVRSDSPLLLTRNNFHRSSSTPCLSPMRADLQQRRDESSPIEILGNSVSFSFVRQMAKDITKAVKKGIDPVAVNSGLGGAYYFKNSRGESVAIVKPTDEEPYAPNNP

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
66	50			50	1.0
327	50			50	1.0
328			50	50	1.0
329		50		50	1.0
341			50	50	1.0
342		50	50		1.0
345	50	50			1.0
346	50	50			1.0
347	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
66	50			50	1.0
327	50			50	1.0
328			50	50	1.0
329		50		50	1.0
341			50	50	1.0
342		50	50		1.0
345	50	50			1.0
346	50	50			1.0
347	50		50		1.0

Position	A %	C %	G %	T %	Probability
66	50			50	1.0
327	50			50	1.0
328			50	50	1.0
329		50		50	1.0
341			50	50	1.0
342		50	50		1.0
345	50	50			1.0
346	50	50			1.0
347	50		50		1.0

Position	A %	C %	G %	T %	Probability
66	50			50	1.0
327	50			50	1.0
328			50	50	1.0
329		50		50	1.0
341			50	50	1.0
342		50	50		1.0
345	50	50			1.0
346	50	50			1.0
347	50		50		1.0