SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47228

Length: 549 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene47228
GCTTCTTCCATCATTACCTCATAAGACAATCTCGCTTCCCGCTACTCATAGTATTGGTGCAACTCGTTCTACAAGAAAACAGATCCCCAGAAACAGTAGAGAAAACGTAGTGGGAACCAGTAAAACTGTGGCAGATATTTCTGATCATGAAAAACTGTTACGTGATAAACCTGAACTTTTGGTGCGTCGGAGCAGATCTCTTCCCAGTGTTGGTTCAGGTGCATGGATCAAGTGTGAATTCTCTTGTTAGACACAAATGTCTGGAAGGTATTAGCAAGGTGCTGTACTTTGGTACAGAGGAGATGTTAAAGTCTTTACTACAGGGAACAAACATACCAAGTTTTTTGGCAGGAGTTTTAACTGGGAAAGATGTCGAAGTTTTGATTCCAGCACTGCAAATGGCAGAAGTTCTAATGCAAAAGCTCCCTCTCACAATTTCCAAGCTGTTTATGAAGGAAGGTGTTGTCCATGCGGTAGAGATGCTTATATCCTCAGATTCATGTTTAGCTGTAAAAGAAAGTGCTACAATGCCACCAACTCTACGACGTA

Ace file of the UniGene sp_v1.1_unigene47228 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hect ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SXV1_RICCO	-	-	7.0e-37	64%
FL-Next	sp=E3 ubiquitin-protein ligase UPL3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%
Blast2go	ubiquitin-protein upl3	-	-	1.23717e-36	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	1.23717e-36	77%
Blast2go	trichome branching	GO:0010091	Biological Process	1.23717e-36	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	1.23717e-36	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6WWW4

Fln msg: Separated hits, possible frame ERROR between 181 and 189, Distance to subject end: 1212 aas, your sequence is shorter than subject: 183 - 1888

Fln protein: LLPSLPHKTISLPATHSIGATRSTRKQIPRNSRENVVGTSKTVADISDHEKLLRDKPELxxxxGADLFPVLVQVHGSSVNSLVRHKCLEGISKVLYFGTEEMLKSLLQGTNIPSFLAGVLTGKDVEVLIPALQMAEVLMQKLPLTISKLFMKEGVVHAVEMLISSDSCLAVKESATMPPTLRR

Protein Length: 184

Fln nts: GCTTCTTCCATCATTACCTCATAAGACAATCTCGCTTCCCGCTACTCATAGTATTGGTGCAACTCGTTCTACAAGAAAACAGATCCCCAGAAACAGTAGAGAAAACGTAGTGGGAACCAGTAAAACTGTGGCAGATATTTCTGATCATGAAAAACTGTTACGTGATAAACCTGAACTTTTxxxxxxxxxCGGAGCAGATCTCTTCCCAGTGTTGGTTCAGGTGCATGGATCAAGTGTGAATTCTCTTGTTAGACACAAATGTCTGGAAGGTATTAGCAAGGTGCTGTACTTTGGTACAGAGGAGATGTTAAAGTCTTTACTACAGGGAACAAACATACCAAGTTTTTTGGCAGGAGTTTTAACTGGGAAAGATGTCGAAGTTTTGATTCCAGCACTGCAAATGGCAGAAGTTCTAATGCAAAAGCTCCCTCTCACAATTTCCAAGCTGTTTATGAAGGAAGGTGTTGTCCATGCGGTAGAGATGCTTATATCCTCAGATTCATGTTTAGCTGTAAAAGAAAGTGCTACAATGCCACCAACTCTACGACGTA

Fln Alignment:

sp_v1.1_unigene47228___LLPSLPHKTISLPATHSIGATRSTRKQIPRNSRENVVGTSKTVADISDHEKLLRDKPELLxxxGADLFPVLVQVHGSSVNSLVRHKCLEGISKVLYFGTEEMLKSLLQGTNIPSFLAGVLTGKDVEVLIPALQMAEVLMQKLPLTISKLFMKEGVVHAVEMLI
Q6WWW4_______________LLPPLPEGVISLPTSTNALVKGSCQKK----SSPSTSGKQEDILKISPREKLLGDQPELLxxxGLDLLPVLVQIYGSSVNGTIRHKCLSVIGKLMYFSSSEMIQSLIGDTNISSFLAGVLAWKDPQVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
360		66	33		0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain