SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47101

Length: 456 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene47101
GAATTGCCAAATGACATTGGAGATCTCAGCAATTTGGAAATTCTGAATATAGGCAGCCCTTCGTTGGAAACCTTGCCGGATTCCCTCGGTAAGCTAACGAAATTGAAGAAATTGACACTGTGCTCGAGGAAATTGAAAGATTTGCCCGACTCTGTTGGTGAGTTAAAACAGTTGACACTCTTGTCAATAAGTGCTCCGATTCGTGAAGTGACATTTGCCAGTGTGGAAAAGGTTCAAGGAGGTCGCAGATTGTTGGACTCTTGTATTGACAAGTGCATGCCTAGACTCAAACAGTTACATTTGTTGAAGACCAGAATAACTGAAATATCATTTGGTGAAGGTGTTTGCCCGGTCCTTGAAGAGCTCAGTCTCAAAGATTGTGATGAGTTAGTGGAGGTTGGAGGATTGCCGACAACGCTAACATCATTGAATTTGGAGGGTTGTTGTGCATTAAAG

Ace file of the UniGene sp_v1.1_unigene47101

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J6_PINTA	-	-	1.0e-18	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	tir nbs lrr disease resistance protein	-	-	6.69589e-34	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1B3

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 152 - 384

Fln protein: ELPNDIGDLSNLEILNIGSPSLETLPDSLGKLTKLKKLTLCSRKLKDLPDSVGELKQLTLLSISAPIREVTFASVEKVQGGRRLLDSCIDKCMPRLKQLHLLKTRITEISFGEGVCPVLEELSLKDCDELVEVGGLPTTLTSLNLEGCCALK

Protein Length: 153

Fln nts: GAATTGCCAAATGACATTGGAGATCTCAGCAATTTGGAAATTCTGAATATAGGCAGCCCTTCGTTGGAAACCTTGCCGGATTCCCTCGGTAAGCTAACGAAATTGAAGAAATTGACACTGTGCTCGAGGAAATTGAAAGATTTGCCCGACTCTGTTGGTGAGTTAAAACAGTTGACACTCTTGTCAATAAGTGCTCCGATTCGTGAAGTGACATTTGCCAGTGTGGAAAAGGTTCAAGGAGGTCGCAGATTGTTGGACTCTTGTATTGACAAGTGCATGCCTAGACTCAAACAGTTACATTTGTTGAAGACCAGAATAACTGAAATATCATTTGGTGAAGGTGTTTGCCCGGTCCTTGAAGAGCTCAGTCTCAAAGATTGTGATGAGTTAGTGGAGGTTGGAGGATTGCCGACAACGCTAACATCATTGAATTTGGAGGGTTGTTGTGCATTAAAG

Fln Alignment:

sp_v1.1_unigene47101___IGDLSNLEILNIGS-PSLETLPDXXXXXXXXXXXXXXXXXXXDLPDSVGELKQLTLLSISA-PIREVTFASVEKVQGGRRLLDSCIDKCMPRLKQLHLLKTRITEISFGEGVCPVLEELSLKDCDELVEVGGLPTTLTSLNLEGCCALK
A9P1B3_______________LGIISTLERLNFSNCHKIEGLAPQVTHQPSLEELILDCTQLKELPSAIGDLRQLTSLSIMCCPIREVPFASVEKVQGGSRLLDSSIDMCMLRLNSLNLSNTRITEISFGEGVCPVLESLALERCNDLVEVGALPTTLTLLDLMDCCALK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
259	25			75	0.996473
273	25		75		0.996473
289	75		25		0.996473
290	75		25		0.996473
293	75		25		0.996473
298		75	25		0.996473
299	75		25		0.996473
306			75	25	0.996473
307	75	25			0.996473
308	75		25		0.996473
309		25	75		0.996473
313	75	25			0.996473
340	33		66		0.997452
343			66	33	0.997452
350		66		33	0.997453
368	66	33			0.997452
376	66			33	0.997458
378			66	33	0.997476
384	33	33	33		0.997751
385	66		33		0.997452
386		33		66	0.997452
388	66	33			0.997452
389	33		66		0.997452
393	25		75		0.996473
394	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain