SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47062

Length: 271 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene47062
CTGCAGTGGAGACTGAAAGAGAAAGACTGGATGCTGTCTTGGTTTTCCCTTCAATGCCAGAGGTAATGAGACTAAATAAACTGGGTTCTTTTAGTATGTCTCAGTTGGGCCAATCCAAAAGCCCTTTCTTTCAAATGTTTAAAAGAAAGAAGAAGTCAGCGGGCTTTGAGGAAAGCATGCTTAAGCTTGTTAGGACCCTACCCAAAGTCCTCAAGTATTTGCCAAGCGACAAGGCTCAGGATGCTAGAGCCTATATCATGAGTTTGCAGTT

Ace file of the UniGene sp_v1.1_unigene47062

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CHLH; magnesium chelatase H subunit; K03403 magnesium chelatase subunit H [EC:6.6.1.1]	-	-	8.0e-38	89%
FL-Next	tr=Magnesium chelatase H subunit; Camellia sinensis (Tea).	-	-	0.0	92%
Blast2go	magnesium chelatase h subunit	-	-	1.7141e-37	94%

Source	ECs	Term	Type	e value	Identity
AutoFact	Magnesium chelatase.	EC:6.6.1.1	-	8.0e-38	89%

Source	KEGGs	Term	e value	Identity
AutoFact	Porphyrin and chlorophyll metabolism	00860	8.0e-38	89%
AutoFact	Metabolic pathways	01100	8.0e-38	89%
AutoFact	Biosynthesis of secondary metabolites	01110	8.0e-38	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	ligase activity	GO:0016874	Molecular Function	1.7141e-37	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.7141e-37	94%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.7141e-37	94%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Magnesium chelatase, subunit H, N-terminal	IPR022571	-	1.7141e-37	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F8SPG3

Fln msg: Distance to subject end: 1136 aas, your sequence is shorter than subject: 89 - 1382

Fln protein: AVETERERLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQMFKRKKKSAGFEESMLKLVRTLPKVLKYLPSDKAQDARAYIMSLQ

Protein Length: 90

Fln nts: CTGCAGTGGAGACTGAAAGAGAAAGACTGGATGCTGTCTTGGTTTTCCCTTCAATGCCAGAGGTAATGAGACTAAATAAACTGGGTTCTTTTAGTATGTCTCAGTTGGGCCAATCCAAAAGCCCTTTCTTTCAAATGTTTAAAAGAAAGAAGAAGTCAGCGGGCTTTGAGGAAAGCATGCTTAAGCTTGTTAGGACCCTACCCAAAGTCCTCAAGTATTTGCCAAGCGACAAGGCTCAGGATGCTAGAGCCTATATCATGAGTTTGCAGTT

Fln Alignment:

sp_v1.1_unigene47062___AVETERERLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQMFKRKKKSAGFEESMLKLVRTLPKVLKYLPSDKAQDARAYIMSLQ
F8SPG3_______________AVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKRKKQSAGFAESMLKLVRTLPKVLKYLPSDKAQDARLYILSLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain