SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47043

Length: 258 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene47043
ATTGCTTCAGAAGGGTCATGCTCCATCTATCAGAACCTTTCATGCATTTTTCAATGTCCTTAGGGATTCAAAGGAAATTCTGAAGCTATTGGAGAGAATGATAGAGAGTAAATGCAATCCAACTATTGAGACTTTCATTATGTTGATCAGGAAGTTTTGTCGTTGGCGCCAATATGAAAATGTCTTTAAGCTCTGGAATGATATGGAGAAGCATAGACTCAATCCTGACCGTAGTGCCTATACTGTGTTGATACATGG

Ace file of the UniGene sp_v1.1_unigene47043

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SHK0_RICCO	-	-	5.0e-26	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	pentatricopeptide repeat-containing	-	-	8.94865e-26	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	8.94865e-26	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWW1

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 85 - 572

Fln protein: LLQKGHAPSIRTFHAFFNVLRDSKEILKLLERMIESKCNPTIETFIMLIRKFCRWRQYENVFKLWNDMEKHRLNPDRSAYTVLIH

Protein Length: 86

Fln nts: ATTGCTTCAGAAGGGTCATGCTCCATCTATCAGAACCTTTCATGCATTTTTCAATGTCCTTAGGGATTCAAAGGAAATTCTGAAGCTATTGGAGAGAATGATAGAGAGTAAATGCAATCCAACTATTGAGACTTTCATTATGTTGATCAGGAAGTTTTGTCGTTGGCGCCAATATGAAAATGTCTTTAAGCTCTGGAATGATATGGAGAAGCATAGACTCAATCCTGACCGTAGTGCCTATACTGTGTTGATACATGG

Fln Alignment:

sp_v1.1_unigene47043___LLQKGHAPSIRTFHAFFNVLRDSKEILKLLERMIESKCNPTIETFIMLIRKFCRWRQYENVFKLWNDMEKHRLNPDRSAYTVLIH
A9NWW1_______________MIMEGFVPTIDIYHAFFRFVENEGAICKLFDKMFENGCAPTMETYIMSIRRCCSWSDYENAFKLWNDMEKHWFSADSSIHYLLLN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain