SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene47021

Length: 396 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene47021
AAGGGGCTTTGAGAGTGTGCTCAGTATTTTGCATTGCTGGGTGGCTTGCCATAGCTTTTGCAAAGGATCCTCTACCATTGGATATTGGAAGACTGTTAGTTGGATATGGAGTTGGGCTAACTTCTTATACAGTGCCTGTGTATATAGCTGAAATATCTCCCAAAAGCTTGAGAGGAGTGCTTACAACTACAAATCAGCTCTTCATAACGACTGGAACATTGATAGTTTATCTTATTGGAGTGCTGGTGACGTGGCGCACTCTTGCTATCACTGGAGTTATTTTCCCAATACTCTTACTCATAGGTCTTTTTCTTATTCCAGAGTCTCCAAGATGGCTGGCAAAGGTTGGTCGTGAAAAAGATTTTGAAGTAGCATTACAAGCCCTTCGAGGAAAGA

Ace file of the UniGene sp_v1.1_unigene47021 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sugar transporter, putative (EC:1.3.1.74)	-	-	2.0e-37	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	sugar	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	General substrate transporter	IPR005828	-	78%
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	78%
Blast2go	Major facilitator superfamily domain	IPR020846	-	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXP9

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 131 - 388

Fln protein: GALRVCSVFCIAGWLAIAFAKDPLPLDIGRLLVGYGVGLTSYTVPVYIAEISPKSLRGVLTTTNQLFITTGTLIVYLIGVLVTWRTLAITGVIFPILLLIGLFLIPESPRWLAKVGREKDFEVALQALRGK

Protein Length: 132

Fln nts: AAGGGGCTTTGAGAGTGTGCTCAGTATTTTGCATTGCTGGGTGGCTTGCCATAGCTTTTGCAAAGGATCCTCTACCATTGGATATTGGAAGACTGTTAGTTGGATATGGAGTTGGGCTAACTTCTTATACAGTGCCTGTGTATATAGCTGAAATATCTCCCAAAAGCTTGAGAGGAGTGCTTACAACTACAAATCAGCTCTTCATAACGACTGGAACATTGATAGTTTATCTTATTGGAGTGCTGGTGACGTGGCGCACTCTTGCTATCACTGGAGTTATTTTCCCAATACTCTTACTCATAGGTCTTTTTCTTATTCCAGAGTCTCCAAGATGGCTGGCAAAGGTTGGTCGTGAAAAAGATTTTGAAGTAGCATTACAAGCCCTTCGAGGAAAGA

Fln Alignment:

sp_v1.1_unigene47021___GALRVCSVFCIAGWLAIAFAKDPLPLDIGRLLVGYGVGLTSYTVPVYIAEISPKSLRGVLTTTNQLFITTGTLIVYLIGVLVTWRTLAITGVXXXXXXXXXXXXXPESPRWLAKVGREKDFEVALQALRGK
A9NXP9_______________GALRVCSVFCIAGWLTIGFAKDPLPLDMGRLLVGYGVGLTSYTVPVYIAEISPKSLRGVLTTTNQLFITTGTLIVYLLGMLVNWRILAITGVIFPILLLTGLFLIPESPRWLAKVGRGKDFEAALQALRGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain