SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46913

Length: 574 nt

UniGene Fasta

>sp_v1.1_unigene46913
GGAGGTGCCAGAATTCAAAATCACAGGAAAATTGCCAGAAAGGTCGGACATAGGCGAGGTCCGTGCCTGACGTCTCAGCAATTCAAAAGCCTCACAGGAAGGTTATTGCTTGATGCCATATGTCAAATAAAAAGGAAAAACCGGAACAAAAATAATGCCAATAGTACAGGATCGTTGAATTTTGAAGCAGGTTCCAGCTCAGGTTTCAACAGGGCTGCAAAGGAAAAAGTAGATAAAAACATGGAAAATTCTGAGAGTAAGAAGGGTAAAGAAGATACCAAGAATAATGTTCCGTTTTATAAGTTATTTACCTTAGCAGACACCTTGGATATTACATTGATGAGTATTGGTACTATTGCATCCGTTGCCAATGGGCTTACACTTCCAGTTATGACCATCTTGTTTGGGAGTCTTATGAATGCGTTCGGACAGAATACAGGCAACCACAGTTTGGTACACGAAGTATCCAAGGTAGCTTTGAATTTTGTGTATCTAGGTGCTTGTACAGCCGTTGCATCCTTCTTTCAGGTGGCTTTTTGGATGTACACAGGGGAATGCAGGCTGCTCGTATTAG

Ace file of the UniGene sp_v1.1_unigene46913

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	multidrug/pheromone exporter, MDR family, ABC transporter family; K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1	-	-	7.0e-26	52%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	50%
Blast2go	multidrug pheromone mdr abc transporter family	-	-	7.74758e-26	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	7.74758e-26	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	7.74758e-26	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC transporter, transmembrane domain, type 1	IPR011527	-	7.74758e-26	66%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Distance to subject end: 1174 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 191 - 1316

Fln protein: GGARIQNHRKIARKVGHRRGPCLTSQQFKSLTGRLLLDAICQIKRKNRNKNNANSTGSLNFEAGSSSGFNRAAKEKVDKNMENSESKKGKEDTKNNVPFYKLFTLADTLDITLMSIGTIASVANGLTLPVMTILFGSLMNAFGQNTGNHSLVHEVSKVALNFVYLGACTAVASFFQVAFWMYTGECRLLVL

Protein Length: 192

Fln nts: GGAGGTGCCAGAATTCAAAATCACAGGAAAATTGCCAGAAAGGTCGGACATAGGCGAGGTCCGTGCCTGACGTCTCAGCAATTCAAAAGCCTCACAGGAAGGTTATTGCTTGATGCCATATGTCAAATAAAAAGGAAAAACCGGAACAAAAATAATGCCAATAGTACAGGATCGTTGAATTTTGAAGCAGGTTCCAGCTCAGGTTTCAACAGGGCTGCAAAGGAAAAAGTAGATAAAAACATGGAAAATTCTGAGAGTAAGAAGGGTAAAGAAGATACCAAGAATAATGTTCCGTTTTATAAGTTATTTACCTTAGCAGACACCTTGGATATTACATTGATGAGTATTGGTACTATTGCATCCGTTGCCAATGGGCTTACACTTCCAGTTATGACCATCTTGTTTGGGAGTCTTATGAATGCGTTCGGACAGAATACAGGCAACCACAGTTTGGTACACGAAGTATCCAAGGTAGCTTTGAATTTTGTGTATCTAGGTGCTTGTACAGCCGTTGCATCCTTCTTTCAGGTGGCTTTTTGGATGTACACAGGGGAATGCAGGCTGCTCGTATTAG

Fln Alignment:

sp_v1.1_unigene46913___NFEAGSSSGFNRAAKEKVDKNMENSESKKGKEDTKNNVPFYKLFTLADTLDITLMSIGTIASVANGLTLPVMTILFGSLMNAFGQN-TGNHSLVHEVSKVALNFVYLGACTAVASFFQVAFWMYTGE
E6Y0T0_______________NHDHGAVS-LNIEKVSEMNSNMAKAKDKKKKENNKV-VPFHKLFVTADSLDKLLMALGTIGAVANGVSIPLMTILFGGLINAFGENSTDGKKVMNEVSKLALEFVYLACGAGVASLLQVSCWMCTGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain