SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46887

Length: 510 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene46887
TCGCAGTACAAGGGCGTGGTTCCGCAGCCCAACGGTCGATGGGGTGCGCAGATTTACGAGAAACACCAGCGCGTCTGGTTGGGAACTTTCAACAAGGAAGAGGACGCCGCCAGGGCCTATGACCGCGCGGCTCTCAAGTTCCGGGGTCGAGACGCCATAACTAACTTCAGTCCGGTGCGAGACGGCGAACCGGAGGCCAGATTCATGATGGAGCACAAGAAAGAAGAAATCGTCGACATGCTCCGAAAGCATACTTACGACGAAGAATTTAGTCATCATAGCAAGAGGATCATGACGACGACAGGTCGAAACATTGCCGAGACGGCGGGGCAGGGCGAGTCCGGCGGTCTGAGAAATCATGCCTGTCAAGAAAACCAGGCGGCCATGGACGGAAACGCCAATTCCGTCTCCTCCATGCGGGGTCTTGCTCGTGAACACCTATTCGACAAGGCCGTCACGCCCAGCGATGTGGGAAAACTAAATCGCCTGGTGATTCCCAAGCAGCACGCT

Ace file of the UniGene sp_v1.1_unigene46887

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RAV1; AP2 domain-containing transcription factor	-	-	2.0e-39	53%
FL-Next	tr=APETALA2 L1; Larix x marschlinsii.	-	-	0.0	45%
Blast2go	ap2 domain-containing transcription factor	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	0.0	66%

Source	InterPros	Term	Type	Identity
Blast2go	AP2/ERF domain	IPR001471	-	66%
Blast2go	DNA-binding pseudobarrel domain	IPR015300	-	66%
Blast2go	DNA-binding, integrase-type	IPR016177	-	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A7J9L7

Fln msg: Distance to subject end: 165 aas, your sequence is shorter than subject: 170 - 529

Fln protein: SQYKGVVPQPNGRWGAQIYEKHQRVWLGTFNKEEDAARAYDRAALKFRGRDAITNFSPVRDGEPEARFMMEHKKEEIVDMLRKHTYDEEFSHHSKRIMTTTGRNIAETAGQGESGGLRNHACQENQAAMDGNANSVSSMRGLAREHLFDKAVTPSDVGKLNRLVIPKQHA

Protein Length: 171

Fln nts: TCGCAGTACAAGGGCGTGGTTCCGCAGCCCAACGGTCGATGGGGTGCGCAGATTTACGAGAAACACCAGCGCGTCTGGTTGGGAACTTTCAACAAGGAAGAGGACGCCGCCAGGGCCTATGACCGCGCGGCTCTCAAGTTCCGGGGTCGAGACGCCATAACTAACTTCAGTCCGGTGCGAGACGGCGAACCGGAGGCCAGATTCATGATGGAGCACAAGAAAGAAGAAATCGTCGACATGCTCCGAAAGCATACTTACGACGAAGAATTTAGTCATCATAGCAAGAGGATCATGACGACGACAGGTCGAAACATTGCCGAGACGGCGGGGCAGGGCGAGTCCGGCGGTCTGAGAAATCATGCCTGTCAAGAAAACCAGGCGGCCATGGACGGAAACGCCAATTCCGTCTCCTCCATGCGGGGTCTTGCTCGTGAACACCTATTCGACAAGGCCGTCACGCCCAGCGATGTGGGAAAACTAAATCGCCTGGTGATTCCCAAGCAGCACGCT

Fln Alignment:

sp_v1.1_unigene46887___SQYKGVV-PQPNGRWGAQIYEKHQRVWLGTFNKXXXXXXXXXXXXLKFRGRDAITNFSPVRDGEPEARFMMEHKKEEIVDMLRKHT
A7J9L7_______________SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFN-IDDYEEDVKQMTKLTKEEFVHVLRRQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain