SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46845

Length: 546 nt

UniGene Fasta

>sp_v1.1_unigene46845
CCAATTCCAATTCCAACCGCATACTCGCAGGTCTCCCTCGCAAATATCGTCCAAGCATGGTTTTCCTTATAGACTAAAGTGCCACTTTGATGAGAAAAGGAATGCTGGTGAGCAGGCAGATAAGACAGCAATTCAAAGAATTTGTGAGAAGCTGATGAATGCTGGCTACATAGATGAAGTGGATAGCAAGCCGCCAGAATTGGGTGCTGGCTCAGCAGGGGAAATATTTCTCCCCAATCCCAAGCAGTTGGCCAAATCCAAAGTAGGGCATACACTGGATAGGAATTGGAGCAAGCCTCAATACCCAATTCCAGAAGCAGGCCAAGGAAGTTCTCCACCTTCTACTATCATTGATAAAGACACTCCGAAGCTCCCCACATTAGCAGAGATGACGATTCCTCCTGAAGAACTGAAGAGGCTGAGGACCCTTGCAATTCGCACTGAGAAGAAGCTCAAAATTGGAAAGGCTGGCATCACTGATGGTATTGTTGATAGCATTCATGAGAGATGGAGGAATTCTGAGATCGTTAAGATCAAGTGCGAGGA

Ace file of the UniGene sp_v1.1_unigene46845

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATCFM2; ATCFM2 (CRM FAMILY MEMBER 2); RNA binding	-	-	4.0e-36	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	49%
Blast2go	protein	-	-	1.89239e-36	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	Group II intron splicing	GO:0000373	Biological Process	1.89239e-36	60%
Blast2go	Group I intron splicing	GO:0000372	Biological Process	1.89239e-36	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA-binding, CRM domain	IPR001890	-	1.89239e-36	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HV32

Fln msg: Distance to subject end: 808 aas, your sequence is shorter than subject: 181 - 1044

Fln protein: QFQFQPHTRRSPSQISSKHGFPYRLKCHFDEKRNAGEQADKTAIQRICEKLMNAGYIDEVDSKPPELGAGSAGEIFLPNPKQLAKSKVGHTLDRNWSKPQYPIPEAGQGSSPPSTIIDKDTPKLPTLAEMTIPPEELKRLRTLAIRTEKKLKIGKAGITDGIVDSIHERWRNSEIVKIKCE

Protein Length: 182

Fln nts: CCAATTCCAATTCCAACCGCATACTCGCAGGTCTCCCTCGCAAATATCGTCCAAGCATGGTTTTCCTTATAGACTAAAGTGCCACTTTGATGAGAAAAGGAATGCTGGTGAGCAGGCAGATAAGACAGCAATTCAAAGAATTTGTGAGAAGCTGATGAATGCTGGCTACATAGATGAAGTGGATAGCAAGCCGCCAGAATTGGGTGCTGGCTCAGCAGGGGAAATATTTCTCCCCAATCCCAAGCAGTTGGCCAAATCCAAAGTAGGGCATACACTGGATAGGAATTGGAGCAAGCCTCAATACCCAATTCCAGAAGCAGGCCAAGGAAGTTCTCCACCTTCTACTATCATTGATAAAGACACTCCGAAGCTCCCCACATTAGCAGAGATGACGATTCCTCCTGAAGAACTGAAGAGGCTGAGGACCCTTGCAATTCGCACTGAGAAGAAGCTCAAAATTGGAAAGGCTGGCATCACTGATGGTATTGTTGATAGCATTCATGAGAGATGGAGGAATTCTGAGATCGTTAAGATCAAGTGCGAGGA

Fln Alignment:

sp_v1.1_unigene46845___KTAIQRICEKLMNAGYIDEVDSKP----PELGAGSAGEIFLPNPKQLAKSKVGHTLDRNWSKPQYPIPEAGQGS------------SPPSTIIDKDTPKLPTLAEMTIPPEELKRLRTLAIRTEKKLKIGKAGITDGIVDSIHERWRNSEIVKIKCE
F6HV32_______________KTAIQRIAEKLRSLGYVDGDESRKVLSSDKPANGSAGEIFVPLPNQLPKHRVGHTIDQSWSLPENPVPEPGTGGVITRFHELRKEVKREKKLVRKEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKIRCE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain