SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46730

Length: 466 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene46730
GGAAAGGGATTGGAATTCTCTACTGCAGAAGGTTCTGGATACTTTTAGAATGTATGGTGAAGAAGAAGAATCAGTTCCAGAGGCATTCAATATCTTGTCAGAAATTAATTTGCTGCACAGGGCAGTGAAGAGAAATTGTAGACAAGTTGTGGATATGCTTCTGTGCTATATACCATCATCAAGTAATTATAGAAACATTGCATTCAGACCAGATGTGATTGGCCCAGGGGTCTTACGCCCCTGCACTTAGCTGCAAGTATGCAAAACGCAGATGACAGAACAGTAGGTTTAAATATAGAGTTGTCTCAGGTCACATTGCGGAAGCTTCCCACAAGTTGTTCCAAGTGCATGAGACTCAGCTCCAACAGGGTATCAAGGCTGGGCAGCTATCATGGTTTAANGTATCCCGCATTTGTTCATTCCTTGCTTGGCATTGCAACAGTCTGTGTTTGTGTATGCTTGCTTG

Ace file of the UniGene sp_v1.1_unigene46730

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SPL1; SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1); DNA binding / transcription factor	-	-	5.0e-10	42%
FL-Next	sp=Squamosa promoter-binding-like protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SMX9

Fln msg: Overlapping hits, possible frame ERROR between 241 and 223, Distance to subject end: 89 aas, your sequence is shorter than subject: 155 - 881

Fln protein: ERDWNSLLQKVLDTFRMYGEEEESVPEAFNILSEINLLHRAVKRNCRQVVDMLLCYIPSSSNYRNIAFRPDVIxxxxxxxxHLAASMQNADDRTVGLNIELSQVTLRKLPTSCSKCMRLSSNRVSRLGSYHGLKYPAFVHSLLGIATVCVCVCLL

Protein Length: 156

Fln nts: GGAAAGGGATTGGAATTCTCTACTGCAGAAGGTTCTGGATACTTTTAGAATGTATGGTGAAGAAGAAGAATCAGTTCCAGAGGCATTCAATATCTTGTCAGAAATTAATTTGCTGCACAGGGCAGTGAAGAGAAATTGTAGACAAGTTGTGGATATGCTTCTGTGCTATATACCATCATCAAGTAATTATAGAAACATTGCATTCAGACCAGATGTGATTxxxxxxxxxxxxxxxxxxxxxxxxCACTTAGCTGCAAGTATGCAAAACGCAGATGACAGAACAGTAGGTTTAAATATAGAGTTGTCTCAGGTCACATTGCGGAAGCTTCCCACAAGTTGTTCCAAGTGCATGAGACTCAGCTCCAACAGGGTATCAAGGCTGGGCAGCTATCATGGTTTAAaGTATCCCGCATTTGTTCATTCCTTGCTTGGCATTGCAACAGTCTGTGTTTGTGTATGCTTGCTTG

Fln Alignment:

sp_v1.1_unigene46730___ERDWNSLLQKVLDTFRMYGEEEESVPEAFNILSEINLLHRAVKRNCRQVVDMLLCYIPSSSNYRNIAFRPDVIGxxxxxxLHLAASMQNADD
Q9SMX9_______________DREWCAVIRKLLNMF-FDGAVGEFSSSSNATLSELCLLHRAVRKNSKPMVEMLLRYIPKQQ--RNSLFRPDAAGxxxxxxLHIAAGKDGSED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain