SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46687

Length: 508 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene46687
CACATATGGCAGGCCATCACACGGGCTCGCGACTTGTCTCCCGACGAGACAACGACCTTCAAGCTCGCAGTGAACTGCAGGCCGAGATTGATTCCTCCGTTGCCTTATTCTTACTTTGGCAACGCCATCCAAATTGTTAGCACCAAAGTCACGGCCGGGGAGCTCCTGGCCTGCGACATCTCTTCCGCAGCGTTGTTGCTCCACCGCATCATATCGCTACACCGCGACGGAAACATCAGGGCGGAGCTGGAAAGNTATAAGCAGCATCGCACGGTACTGAGGTTGGATAGAACGATACGCGACAACAGTGTGATGATGGGAAGCTCTCCAAGATTTCCAATGTACGACAACGATTTTGGATGGGGTAACCCAGTGGGCGTGAGGAGCGGTTGGGCAAACAAATTTGACGGTAAAATGTCTGCGTATCCTGGGAGGGAAGGAGGGGGTGGTGTGGATGGTCGAGATTTGTCTTCAGCCTCATTCCATGGCTGCCTTGGAGAGCGACTCA

Ace file of the UniGene sp_v1.1_unigene46687

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transferase family protein [Arabidopsis thaliana] emb\|CAB69849.1\| anthranilate N-benzoyltransferase-like protein [Arabidopsis thaliana] gb\|AAL08268.1\| AT5g01210/F7J8_190 [Arabidopsis thaliana] gb\|AAL90982.1\| AT5g01210/F7J8_190 [Arabidopsis thaliana] dbj\|B	-	-	4.0e-35	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	transferase family protein	-	-	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transferase	IPR003480	-	0.0	68%
Blast2go	Chloramphenicol acetyltransferase-like domain	IPR023213	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS40

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 169 - 440

Fln protein: HIWQAITRARDLSPDETTTFKLAVNCRPRLIPPLPYSYFGNAIQIVSTKVTAGELLACDISSAALLLHRIISLHRDGNIRAELERYKQHRTVLRLDRTIRDNSVMMGSSPRFPMYDNDFGWGNPVGVRSGWANKFDGKMSAYPGREGGGGVDGRDLSSASFHGCLGERL

Protein Length: 170

Fln nts: CACATATGGCAGGCCATCACACGGGCTCGCGACTTGTCTCCCGACGAGACAACGACCTTCAAGCTCGCAGTGAACTGCAGGCCGAGATTGATTCCTCCGTTGCCTTATTCTTACTTTGGCAACGCCATCCAAATTGTTAGCACCAAAGTCACGGCCGGGGAGCTCCTGGCCTGCGACATCTCTTCCGCAGCGTTGTTGCTCCACCGCATCATATCGCTACACCGCGACGGAAACATCAGGGCGGAGCTGGAAAGaTATAAGCAGCATCGCACGGTACTGAGGTTGGATAGAACGATACGCGACAACAGTGTGATGATGGGAAGCTCTCCAAGATTTCCAATGTACGACAACGATTTTGGATGGGGTAACCCAGTGGGCGTGAGGAGCGGTTGGGCAAACAAATTTGACGGTAAAATGTCTGCGTATCCTGGGAGGGAAGGAGGGGGTGGTGTGGATGGTCGAGATTTGTCTTCAGCCTCATTCCATGGCTGCCTTGGAGAGCGACTCA

Fln Alignment:

sp_v1.1_unigene46687___HIWQAITRARDLSPDETTTFKLAVNCRPRLIPPLPYSYFGNAIQIVSTKVTAGELLACDISSAALLLHRIISLHRDGNIRAELERYKQHRTVLRLDRTIRDNSVMMGSSPRFPMYDNDFGWGNPVGVRSGWANKFDGKMSAYP
B8LS40_______________HIWQAITRARGLPPNEPTTFKLAVNCRPRLDPPLPYSYFGNAIQIVSTTVTAGELLACDISSAAGLLQRIIWPHRDGNIRAELQKYKQRPTVVKLDRTIRDNSVMMGSSPRFPMYDNDFGWGRPVGVRSGWANKFDGKMSAYP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain