SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46675

Length: 489 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene46675
CTTTTGCCGTTATGGATTGTTACTTTGGTGGGATACTGGGCATATGGTTCATCAACTTCATCATACCTTCTCAACAATGTCCAAGGACCCGAGTGGATTAAAACTCTGGCAAACATTTCTGCTTTTCTGCAGACTGTGATAACAATCCATATATTTGCAAGCCCAATGTATGAATATTTGGATACAGAGTACGGGAGGAGCACCGAAAGCATTTATTCTGTACACAATTGGACCGTGAGACTGGTAACTCGAGCAACTTACCTGATAGTGACCACATGTGTGGCGGCACTGTTCCCATTTCTGGGGGATTTTATGATTCTCACAGGCGCACTCAGCACTTTCCCGCTGACATTTGTGCTGGCAAACCATATGTATATTAAAGTGAAAGGAAATGATTTGAGTTTTTTACAGAAATCATGGCATTGGGCGAATGTATGGCTTTTTGCCTTCTTGGCAGTAGCAGGGTCCGTGGCTGCTGTCCGCTTCATT

Ace file of the UniGene sp_v1.1_unigene46675

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os03g0644400 protein n=4 Tax=Oryza sativa RepID=Q60DN5_ORYSJ	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	proline transporter	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	proline transport	GO:0015824	Biological Process	77%
Blast2go	L-proline transmembrane transporter activity	GO:0015193	Molecular Function	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid transporter, transmembrane	IPR013057	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7Z1

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 163 - 508

Fln protein: LLPLWIVTLVGYWAYGSSTSSYLLNNVQGPEWIKTLANISAFLQTVITIHIFASPMYEYLDTEYGRSTESIYSVHNWTVRLVTRATYLIVTTCVAALFPFLGDFMILTGALSTFPLTFVLANHMYIKVKGNDLSFLQKSWHWANVWLFAFLAVAGSVAAVRFI

Protein Length: 164

Fln nts: CTTTTGCCGTTATGGATTGTTACTTTGGTGGGATACTGGGCATATGGTTCATCAACTTCATCATACCTTCTCAACAATGTCCAAGGACCCGAGTGGATTAAAACTCTGGCAAACATTTCTGCTTTTCTGCAGACTGTGATAACAATCCATATATTTGCAAGCCCAATGTATGAATATTTGGATACAGAGTACGGGAGGAGCACCGAAAGCATTTATTCTGTACACAATTGGACCGTGAGACTGGTAACTCGAGCAACTTACCTGATAGTGACCACATGTGTGGCGGCACTGTTCCCATTTCTGGGGGATTTTATGATTCTCACAGGCGCACTCAGCACTTTCCCGCTGACATTTGTGCTGGCAAACCATATGTATATTAAAGTGAAAGGAAATGATTTGAGTTTTTTACAGAAATCATGGCATTGGGCGAATGTATGGCTTTTTGCCTTCTTGGCAGTAGCAGGGTCCGTGGCTGCTGTCCGCTTCATT

Fln Alignment:

sp_v1.1_unigene46675___VTLVGYWAYGSSTSSYLLNNV--QGPEWIKTLANISAFLQTVITIHIFASPMYEYLDTEYGRS-TESIYSVHNWTV-------------RLVTRATYLIVTTCVAALFPFLGDFMILTGALSTFPLTFVLANHMYIKVKGNDLSFLQKSWHWANVWLFAFL-------AVAGSVAAV
D5A7Z1_______________VGCAGYAAFGDHAPGNLLTGFGFYNPFWLVDIANICIVIHLVGAYQVFCQPLYAFVEEWSANTWTKSCFIQNEYKVPIPGLGEFKLNLFRLVWRTCFVVFTTVVSMVLPFFNAIMGVLGAIAFFPLTVYFPIQMHIA----QTKLRRWSFKWVALQLMCVLCFFVTMAALVGSIAGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain