SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46636

Length: 539 nt

UniGene Fasta

>sp_v1.1_unigene46636
ATGGGGGTGGCAGCTCAGGTGATCACAATGTTTCTGATATTTTGTCATTCACGGTCACAGATGCCTCAGCTGCTGCGCTCCGTCGAAGCCTTAACAATGCCCAGAGTTCAAGTGATTGTTCTGAACGCAAATATGTGCTGTCTGCAGTGCCGTGATAGGGTGTCCAGAGTTCTCTCCAGAATGGACAAATTGCTGGACTATGTGGTAGACGCAGCGCAGAACAAGGTAACAGTTAAAGGACGTGTGAATCCCAAGAAGAGAGTGCAACGAATTAGATTAATGGAAAACGACGACAAGAGGAGAAAAACCATCGAATTTCAGAGGTTGGGAGGTGAAGGATATCCGTCATGCACTAGTGACCACATAGAGCAGCGTGACTACAACAGCAGGTGTGAGGTGAAATCAACCTATAATCTCATTCAACGGACCTGCTGTTTTTGTTGTGCGTCGTCTTAGCTGCATCGGTTGCTTATGGATCTGTAGTCGTTGACTTGGTTAAGGAATCCAAAGTCGTTTTTGTATATACACAGAGGAAATGA

Ace file of the UniGene sp_v1.1_unigene46636

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	heavy-metal-associated domain-containing protein	-	-	8.0e-06	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	unknown [Picea sitchensis]	-	-	4.86744e-26	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heavy metal-associated domain, HMA	IPR006121	-	4.86744e-26	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSK1

Fln msg: your sequence is longer than subject: 152 - 112

Fln protein: MGVAAQVITMFLIFCHSRSQMPQLLRSVEALTMPRVQVIVLNANMCCLQCRDRVSRVLSRMDKLLDYVVDAAQNKVTVKGRVNPKKRVQRIRLMENDDKRRKTIEFQRLGGEGYPSCTSDHIEQRDYNSRCEVKSTYNLIQRTCCFCCASS*

Protein Length: 153

Fln nts: _-_ATGGGGGTGGCAGCTCAGGTGATCACAATGTTTCTGATATTTTGTCATTCACGGTCACAGATGCCTCAGCTGCTGCGCTCCGTCGAAGCCTTAACAATGCCCAGAGTTCAAGTGATTGTTCTGAACGCAAATATGTGCTGTCTGCAGTGCCGTGATAGGGTGTCCAGAGTTCTCTCCAGAATGGACAAATTGCTGGACTATGTGGTAGACGCAGCGCAGAACAAGGTAACAGTTAAAGGACGTGTGAATCCCAAGAAGAGAGTGCAACGAATTAGATTAATGGAAAACGACGACAAGAGGAGAAAAACCATCGAATTTCAGAGGTTGGGAGGTGAAGGATATCCGTCATGCACTAGTGACCACATAGAGCAGCGTGACTACAACAGCAGGTGTGAGGTGAAATCAACCTATAATCTCATTCAACGGACCTGCTGTTTTTGTTGTGCGTCGTCTTAG___CTGCATCGGTTGCTTATGGATCTGTAGTCGTTGACTTGGTTAAGGAATCCAAAGTCGTTTTTGTATATACACAGAGGAAATGA

Fln Alignment:

sp_v1.1_unigene46636___LIFCHSRSQMP----QLLRSVEALTMPRVQVIVLNANMCCLQCRDRVSRVLSRMDKLLDYVVDAAQNKVTVKGRVNPKKRVQRIRLMENDDKRRKTIE
A9NSK1_______________MVFSHQATQMAPATTEMLRSAEALTMPGVQVIVLYANMSCQECRDKVTKVLSKMDDLLDYVVDLTQKKVTVRGRVDPKKRMQRIRSMA-DDKKRKTID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain