SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46618

Length: 280 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene46618
CTTATCTCCACTATGGGATATTGATCTGCAAGGCAAGGTCAATGGGGCAGTGAAACATGCAGGAGCAGTAACCCATGGGTGAGGTCAAAGAGTTTCAGAAGTTATCTCAATTTCTCTCATCCTCTTGTAGCAAGCAATTTCGATGCAAACCAATGTGCATGGGCATATGGTATGAATTTATTTGATCTGCAAGCCTGGAGAAGGACAAACATCAAAGACATTTATCATTATTGGCTTAAAGAAAATCTGAATTCAAAATTAACACTCTGGCGTTTGGGCA

Ace file of the UniGene sp_v1.1_unigene46618

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pco078108b; LOC100279278; K13648 alpha-1,4-galacturonosyltransferase [EC:2.4.1.43]	-	-	2.0e-34	71%
FL-Next	sp=Probable galacturonosyltransferase 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	cazy family gt8	-	-	5.3416e-34	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	2.0e-34	71%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Starch and sucrose metabolism	00500		2.0e-34	71%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520		2.0e-34	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	5.3416e-34	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GWT1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 81 aas, your sequence is shorter than subject: 93 - 532

Fln protein: LISTMGY*SARQGQWGSETCRSSNPWVRSKSFRSYLNFSHPLVASNFDANQCAWAYGMNLFDLQAWRRTNIKDIYHYWLKENLNSKLTLWRLG

Protein Length: 94

Fln nts: CTTATCTCCACTATGGGATATTGATCTGCAAGGCAAGGTCAATGGGGCAGTGAAACATGCAGGAGCAGTAACCCATGGGTGAGGTCAAAGAGTTTCAGAAGTTATCTCAATTTCTCTCATCCTCTTGTAGCAAGCAATTTCGATGCAAACCAATGTGCATGGGCATATGGTATGAATTTATTTGATCTGCAAGCCTGGAGAAGGACAAACATCAAAGACATTTATCATTATTGGCTTAAAGAAAATCTGAATTCAAAATTAACACTCTGGCGTTTGGGCA

Fln Alignment:

sp_v1.1_unigene46618___ETCRSSNPWVRSKSFRSYLNFSHPLVASNFDANQCAWAYGMNLFDLQAWRRTNIKDIYHYWLKENLNSKLTLWRLG
Q8GWT1_______________ETCRGEDEWVMSKRLRNYFNFSHPLIAKHLDPEECAWAYGMNIFDLQAWRKTNIRETYHSWLRENLKSNLTMWKLG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain