SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46570

Length: 300 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene46570
TGCAACTCACAAGTTGCAAGCATATTCCATACACTGCATGCCACTGAGTCGCCGCCTACATATTTCAGGACGAACAAGTTCACTGGGGCTTTCCAAGAAATTGTTGATGCATATGGCATGGCAAAGTATCGGGAAGCAAATCCTACAGTATACACAATCATCACGTTTCCATTTTTGTTGCTGTTATGTTTGGTGATTGGGGTCATGGCCTATGCTTATTGATTGCAACATTGGTGCTCATTTGTAGAGAAGAAAAAACTTGGACGTCAGAAACTTGGAGACATTATGGAGATGGCATTT

Ace file of the UniGene sp_v1.1_unigene46570

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vacuolar proton atpase, putative (EC:3.6.3.14); K02154 V-type H+-transporting ATPase subunit I [EC:3.6.3.14]	-	-	1.0e-25	55%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	55%
Blast2go	protein	-	-	1.15293e-25	65%

Source	ECs	Term	Type	e value	Identity
AutoFact	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	1.0e-25	55%

Source	KEGGs	Term	e value	Identity
AutoFact	Oxidative phosphorylation	00190	1.0e-25	55%
AutoFact	Photosynthesis	00195	1.0e-25	55%
AutoFact	Methane metabolism	00680	1.0e-25	55%
AutoFact	Metabolic pathways	01100	1.0e-25	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to salt stress	GO:0071472	Biological Process	1.15293e-25	65%
Blast2go	cellular response to nutrient levels	GO:0031669	Biological Process	1.15293e-25	65%
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	1.15293e-25	65%
Blast2go	hydrogen-translocating pyrophosphatase activity	GO:0009678	Molecular Function	1.15293e-25	65%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.15293e-25	65%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	1.15293e-25	65%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.15293e-25	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.15293e-25	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GRH1

Fln msg: Distance to subject end: 354 aas, your sequence is shorter than subject: 100 - 807

Fln protein: CNSQVASIFHTLHATESPPTYFRTNKFTGAFQEIVDAYGMAKYREANPTVYTIITFPFLLLLCLVIGVMAYAY*LQHWCSFVEKKKLGRQKLGDIMEMAF

Protein Length: 101

Fln nts: TGCAACTCACAAGTTGCAAGCATATTCCATACACTGCATGCCACTGAGTCGCCGCCTACATATTTCAGGACGAACAAGTTCACTGGGGCTTTCCAAGAAATTGTTGATGCATATGGCATGGCAAAGTATCGGGAAGCAAATCCTACAGTATACACAATCATCACGTTTCCATTTTTGTTGCTGTTATGTTTGGTGATTGGGGTCATGGCCTATGCTTATTGATTGCAACATTGGTGCTCATTTGTAGAGAAGAAAAAACTTGGACGTCAGAAACTTGGAGACATTATGGAGATGGCATTT

Fln Alignment:

sp_v1.1_unigene46570___NSQVASIFHTLHATESPPTYFRTNKFTGAFQEIVDAYGMAKYREANPTVYTIITFPFLLL---------LCLVIGVMAYAY*LQHWCSFVEKKKLGRQKLGDIMEMAF
B9GRH1_______________SSQIGAIFHVLQTKDSPPTYFRTNKFTSAFQEIVDAYGVAKYQEANPSVYTIVTFPFLFAVMFGDWGHGICLLLATLYFIF---------REKKLSSQKLGDIMEMAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain