SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46525

Length: 251 nt

UniGene Fasta

>sp_v1.1_unigene46525
ACACTAAAAACATTGAAGAATCTGGAATCTGCCATGGACAACTGGATGCCTCGGCTGCGAGATTTGGAACTTCACAACACGAAATTATCAGAGGTATTATTTGCTGCAGGTGTTTGTCCCATCCTTCAATATTTCTCTATCAGGGTTTGTAATGATCTGGTGGAGGTCGGAGCATTGCCAAGTGCACTGGTAAAACTGGAATTGACTGATTGTTCTAACTTGAGGAAATTAGAAGGGCTTTGTGGTCTTGC

Ace file of the UniGene sp_v1.1_unigene46525

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J6_PINTA	-	-	6.0e-10	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	tir-nbs-lrr protein	-	-	8.7107e-26	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7Y8

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 72 - 174

Fln protein: MDNWMPRLRDLELHNTKLSEVLFAAGVCPILQYFSIRVCNDLVEVGALPSALVKLELTDCSNLRKLEGLCGL

Protein Length: 73

Fln nts: ACACTAAAAACATTGAAGAATCTGGAATCTGCC_-_ATGGACAACTGGATGCCTCGGCTGCGAGATTTGGAACTTCACAACACGAAATTATCAGAGGTATTATTTGCTGCAGGTGTTTGTCCCATCCTTCAATATTTCTCTATCAGGGTTTGTAATGATCTGGTGGAGGTCGGAGCATTGCCAAGTGCACTGGTAAAACTGGAATTGACTGATTGTTCTAACTTGAGGAAATTAGAAGGGCTTTGTGGTCTTGC

Fln Alignment:

sp_v1.1_unigene46525___MDNWMPRLRDLELHNTKLSEVLFAAGVCPILQYFSIRVCNDLVEVGALPSALVKLELTDCSNLRKLEGLCGL
D5A7Y8_______________MDNCMPRLQDLELYNTKLSEVSFATGVCPILQYLSVRFCNDLVEVGTLPNALIELELTNCSNLRKIEGLRGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain