SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46522

Length: 483 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene46522
CCTTTCTACGTAAGTATTGTCAGGCTTTTCTCCCTGCGTAAAGCATGGGTACATACGGAAGCCTGAATCCTGTATTAGAGGTAACAGTACATGGATGCAGCAACCTGAAAAACATCAGTTACTTCACAAAACTCCATCCCTACGTTTGGCTTAATTACGTTGGTTTGGAATTTTGGACTACAACACACAGAGGTGGTGGATTGAATCCAAGATACGACCAGAAATTTTACTTTCGTCTGATAGAGGACGTCGATCAGCTAGATGTCGAAGTTTACAGCAGAGGCACAGTCACGTCGGATTCTTTCATTGGTTCAGAGTGTACCTGGGAACGGTTCTAAGTACAGGGTACGATGAAACAGCATGGCCCATTGTAGATAAACGCAATAAATATGCAGGAGAAGTAAGACTTACCATGCTACTTCTAAGAAGCCAAATACAGCAGCCACGAATAACACCGAGTGCTCCTCCAATAATACCGAGCGC

Ace file of the UniGene sp_v1.1_unigene46522

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2 domain-containing protein / protein kinase-related [Musa acuminata]	-	-	7.0e-16	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	protein	-	-	4.90371e-21	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	C2 calcium-dependent membrane targeting	IPR000008	-	4.90371e-21	59%
Blast2go	C2 calcium/lipid-binding domain, CaLB	IPR008973	-	4.90371e-21	59%
Blast2go	C2 membrane targeting protein	IPR018029	-	4.90371e-21	59%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P089

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 48 aas, putative chimeric sequence, your sequence is shorter than subject: 98 - 140

Fln protein: MGTYGSLNPVLEVTVHGCSNLKNISYFTKLHPYVWLNYVGLEFWTTTHRGGGLNPRYDQKFYFRLIEDVDQLDVEVYSRGTVTSDSFIGSECTWERF*

Protein Length: 99

Fln nts: CCTTTCTACGTAAGTATTGTCAGGCTTTTCTCCCTGCGTAAAGC_-_ATGGGTACATACGGAAGCCTGAATCCTGTATTAGAGGTAACAGTACATGGATGCAGCAACCTGAAAAACATCAGTTACTTCACAAAACTCCATCCCTACGTTTGGCTTAATTACGTTGGTTTGGAATTTTGGACTACAACACACAGAGGTGGTGGATTGAATCCAAGATACGACCAGAAATTTTACTTTCGTCTGATAGAGGACGTCGATCAGCTAGATGTCGAAGTTTACAGCAGAGGCACAGTCACGTCGGATTCTTTCATTGGTTCAGAGTGTACCTGGGAACGGTTCTAA___GTACAGGGTACGATGAAACAGCATGGCCCATTGTAGATAAACGCAATAAATATGCAGGAGAAGTAAGACTTACCATGCTACTTCTAAGAAGCCAAATACAGCAGCCACGAATAACACCGAGTGCTCCTCCAATAATACCGAGCGC

Fln Alignment:

sp_v1.1_unigene46522___LEVTVHGCSNLKNISYFTKLHPYVWLNYVGLEFWTTTHRGGGLNPRYDQKFYFRLIEDVDQLDVEVYSRGTVTSDSFIG
A9P089_______________LEVLLLNAKGLQTTDFLCKMDPYCIIKCRTQQQKSTVASDQGRNPEWNEKFLFNISEGVSDLVIRIMDKDTFTADDFIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain