SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46449

Length: 414 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene46449
AATGTTGTCACATGGAGTACGATAGTTGCAGGATATGCCCAAAATGGGTATGCCTCTGAGGCTTTCGAAGTTTTCCAGCAAATGCTGGAGGCAGGGGTGAAATCTGATTCTGTTGCCATTGCCAGTGTTCTCCAGGCATGTGCTCATCTGGCAGCTTTACTACAGGGCAAGACCATTCATGATTTCATACTCAGAAATGGGCTTGATGAGGAGCTTTTGGTGGTGAATGCCCTTATAACTATGTACACCAAATGCGGGAGTATAGGATATGCACACAAATTGTTTGATGAAATGTTTGAAAGAGATGTGATCTCATGGAATGCAATCATTGGAGGGTATGCAATGCATGGTTATGGTGAAGATGCTCTCAAACTCTTCTACAGAATGCAACAGGTAGGCATGAAGCCTGATCAT

Ace file of the UniGene sp_v1.1_unigene46449 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	4.0e-28	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	pentatricopeptide repeat-containing	-	-	5.28318e-31	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	5.28318e-31	69%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: STOP codon was not found. Distance to subject end: 57 aas, your sequence is shorter than subject: 138 - 394

Fln protein: NVVTWSTIVAGYAQNGYASEAFEVFQQMLEAGVKSDSVAIASVLQACAHLAALLQGKTIHDFILRNGLDEELLVVNALITMYTKCGSIGYAHKLFDEMFERDVISWNAIIGGYAMHGYGEDALKLFYRMQQVGMKPDH

Protein Length: 139

Fln nts: AATGTTGTCACATGGAGTACGATAGTTGCAGGATATGCCCAAAATGGGTATGCCTCTGAGGCTTTCGAAGTTTTCCAGCAAATGCTGGAGGCAGGGGTGAAATCTGATTCTGTTGCCATTGCCAGTGTTCTCCAGGCATGTGCTCATCTGGCAGCTTTACTACAGGGCAAGACCATTCATGATTTCATACTCAGAAATGGGCTTGATGAGGAGCTTTTGGTGGTGAATGCCCTTATAACTATGTACACCAAATGCGGGAGTATAGGATATGCACACAAATTGTTTGATGAAATGTTTGAAAGAGATGTGATCTCATGGAATGCAATCATTGGAGGGTATGCAATGCATGGTTATGGTGAAGATGCTCTCAAACTCTTCTACAGAATGCAACAGGTAGGCATGAAGCCTGATCAT

Fln Alignment:

sp_v1.1_unigene46449___NVVTWSTIVAGYAQNGYASEAFEVFQQMLEAGVKSDSVAIASVXXXXXXXXXXXQGKTIHDFILRNGLDEELLVVNALITMYTKCGSIGYAHKLFDEMFERDVISWNAIIGGYAMHGYGEDALKLFYRMQQVGMKPD
B8LKN6_______________NLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFRKMQCAGLKID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain