SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46396

Length: 421 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene46396
GCGACTGCAGATATAACAAGATACAGGGACTACTTTAAGGATCTTGGTAAGGATGAAAGGGTTGAAGTGATTGCACTGCCGAGTTCCTTAGTGCAGCGTTCNGTTTTTCAATGCAGAGTGATGTACCTTGAACAGGTACTCGAACTTCTTAAAAGGAATCCTGAATGTCTATCAGATTTGGAATCATCTAAAGAAGGCCGTGATGAAGCTGATATAAATGATGAAGTGCACTACCTGATTCGAGATCTGGTGATGCATATTCATGAACAAGAGCAAGACCTAAAGAATAGCATTTTGGTTTTCCTACCAACATATCGGTCCCTGGAGCAGCAGTGGCTGCTTTTAAGACATTCTAGGATGTGTTTCAAGGTCCATGTTCTTCACAGTAGCATTGATATTGAACAAGCAACAAGAGCTATGC

Ace file of the UniGene sp_v1.1_unigene46396 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase, putative	-	-	6.0e-33	56%
FL-Next	sp=Zinc finger CCCH domain-containing protein 4; Oryza sativa subsp. japonica (Rice).	-	-	0.0	52%
Blast2go	zinc finger helicase family protein	-	-	1.73677e-37	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	1.73677e-37	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q1EHT7

Fln msg: Distance to subject end: 696 aas, your sequence is shorter than subject: 140 - 1007

Fln protein: ATADITRYRDYFKDLGKDERVEVIALPSSLVQRSVFQCRVMYLEQVLELLKRNPECLSDLESSKEGRDEADINDEVHYLIRDLVMHIHEQEQDLKNSILVFLPTYRSLEQQWLLLRHSRMCFKVHVLHSSIDIEQATRAM

Protein Length: 141

Fln nts: GCGACTGCAGATATAACAAGATACAGGGACTACTTTAAGGATCTTGGTAAGGATGAAAGGGTTGAAGTGATTGCACTGCCGAGTTCCTTAGTGCAGCGTTCtGTTTTTCAATGCAGAGTGATGTACCTTGAACAGGTACTCGAACTTCTTAAAAGGAATCCTGAATGTCTATCAGATTTGGAATCATCTAAAGAAGGCCGTGATGAAGCTGATATAAATGATGAAGTGCACTACCTGATTCGAGATCTGGTGATGCATATTCATGAACAAGAGCAAGACCTAAAGAATAGCATTTTGGTTTTCCTACCAACATATCGGTCCCTGGAGCAGCAGTGGCTGCTTTTAAGACATTCTAGGATGTGTTTCAAGGTCCATGTTCTTCACAGTAGCATTGATATTGAACAAGCAACAAGAGCTATGC

Fln Alignment:

sp_v1.1_unigene46396___ATADITRYRDYFKDLGKDERVEVIALPSSLVQRSVFQCRVMYLEQVLELLKRNPECLSDLE-SSKEGRDEADINDEVHYLIRDLVMHIHEQEQDLKNSILVFLPTYRSLEQQWLLLRHSRMCFKVHVLHSSIDIEQATRAM
Q1EHT7_______________ATADITRYKDYFRDLGRGERVEVIAIPSS-PRSSIFQRKVLYLEQIVDILKMDSESLSTKYCSGPNTAADAGLKPDVYELIHRLLLHIHQNEPDIGKSILVFLPTYYALEQQWIRLLSASSMFKVHILHRSIDTDEALQTM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain