SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46368

Length: 362 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene46368
TTCTGAGATGGCTTTTGGAGCATTGGCAGGGCATATGCAACTTGGGGATACTTATTCTATGTTGGGTCAATATGAGAATGCCGTGAAATCTTACCGTGAAGGCCTCAGAATTCAGAAGCAGGCTCTGGGAGATAATGATCGTCGAGTTGCTGATACTTGCCGGTATATAGCAGAGTCTCATCTGCAGGTCATGCAGTTCACAGAGGCAGAGGAGCTATGTAAACATGCTCAAAAGATTCATTCTGAACAATGTGGTGCAGGTTCAGAAGAAGAAGGTTTAGACAGAAAGTTAATGGCTATTATTCTTAGTGGAAATGGTGACCATGAGAAAGCATTGTAAAATTTGGCTCTAGCAAGAGTTG

Ace file of the UniGene sp_v1.1_unigene46368 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinesin light chain, putative n=1 Tax=Ricinus communis RepID=B9RB32_RICCO	-	-	9.0e-30	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	kinesin light	-	-	2.54843e-33	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.54843e-33	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tetratricopeptide TPR-1	IPR001440	-	2.54843e-33	70%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	2.54843e-33	70%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	2.54843e-33	70%
Blast2go	Tetratricopeptide repeat	IPR019734	-	2.54843e-33	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKE5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 305 aas, your sequence is shorter than subject: 113 - 824

Fln protein: SEMAFGALAGHMQLGDTYSMLGQYENAVKSYREGLRIQKQALGDNDRRVADTCRYIAESHLQVMQFTEAEELCKHAQKIHSEQCGAGSEEEGLDRKLMAIILSGNGDHEKAL*

Protein Length: 114

Fln nts: TTCTGAGATGGCTTTTGGAGCATTGGCAGGGCATATGCAACTTGGGGATACTTATTCTATGTTGGGTCAATATGAGAATGCCGTGAAATCTTACCGTGAAGGCCTCAGAATTCAGAAGCAGGCTCTGGGAGATAATGATCGTCGAGTTGCTGATACTTGCCGGTATATAGCAGAGTCTCATCTGCAGGTCATGCAGTTCACAGAGGCAGAGGAGCTATGTAAACATGCTCAAAAGATTCATTCTGAACAATGTGGTGCAGGTTCAGAAGAAGAAGGTTTAGACAGAAAGTTAATGGCTATTATTCTTAGTGGAAATGGTGACCATGAGAAAGCATTGTAAAATTTGGCTCTAGCAAGAGTTG

Fln Alignment:

sp_v1.1_unigene46368___SEMAFGALAGHMQLGDTYSMLGQYENAVKSYREGLRIQKQALGDNDRRVADTCRYIAESHLQVMQFTEAEELCKHAQKIHSEQCGAGSEEEGLDRKLMAIILSGNGDHEKAL*NLALA
B8LKE5_______________SEHALATFAGRMQLGDTYAMLGQLENSIECYKSGLEIQKQVLGEMDPRVGETCRYLAEAHVQAMQFDEAEKLCKHALDIHKEHSTPASLEEAADRRLMALICDGKGDYEAALEHLVLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain