SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46310

Length: 354 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene46310
CTAATGCAGCCCCTGCTGCTGGAAGATCCATGGGGACTTCCAGGTTGCCCACCTCAATGGTGAAAGTGGCCAAGTTGATGGACAGCTACCTTGCTGAAATAGCTTACGATGTCAACCTCGATGTTTCGAGCTTTGAAGCATTGGCTGACGGTCTTCCGTGTGATGCTCGGACCTGTGACGATGGTTTGTACAGGGCCATAGACACCTATCTCAAGACTCATTCAGGAATCTCTGAGGTGGAGAGGAGAAGACTCTGTAGATTAATGGACTGTCAGAAGCTCTCGGCTGATGCATGCTTTCATGCTGCTCAGAATGAACGGCTTCCCATCCGAACAGTGGTCCATGTTCTTTCTG

Ace file of the UniGene sp_v1.1_unigene46310

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NPH3 domain containing protein	-	-	3.00018e-42	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	protein	-	-	9.75975e-33	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	phototropism	GO:0009638	Biological Process	9.75975e-33	79%
Blast2go	blue light signaling pathway	GO:0009785	Biological Process	9.75975e-33	79%
Blast2go	protein binding	GO:0005515	Molecular Function	9.75975e-33	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NPH3	IPR004249	-	9.75975e-33	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 117 - 648

Fln protein: NAAPAAGRSMGTSRLPTSMVKVAKLMDSYLAEIAYDVNLDVSSFEALADGLPCDARTCDDGLYRAIDTYLKTHSGISEVERRRLCRLMDCQKLSADACFHAAQNERLPIRTVVHVLS

Protein Length: 118

Fln nts: CTAATGCAGCCCCTGCTGCTGGAAGATCCATGGGGACTTCCAGGTTGCCCACCTCAATGGTGAAAGTGGCCAAGTTGATGGACAGCTACCTTGCTGAAATAGCTTACGATGTCAACCTCGATGTTTCGAGCTTTGAAGCATTGGCTGACGGTCTTCCGTGTGATGCTCGGACCTGTGACGATGGTTTGTACAGGGCCATAGACACCTATCTCAAGACTCATTCAGGAATCTCTGAGGTGGAGAGGAGAAGACTCTGTAGATTAATGGACTGTCAGAAGCTCTCGGCTGATGCATGCTTTCATGCTGCTCAGAATGAACGGCTTCCCATCCGAACAGTGGTCCATGTTCTTTCTG

Fln Alignment:

sp_v1.1_unigene46310___GRSMGTSRLPTSMVKVAKLMDSYLAEIAYDVNLDVSSFEALADGLPCDARTCDDGLYRAIDTYLKTHSGISEVERRRLCRLMDCQKLSADACFHAAQNERLPIRTVVHVL
B8LPD8_______________GGFMGSPSM-TPIMMVGKLVDGYLAEVAPDGNLKPAKFHSLADALPDYARLFDDGLYRAIDIYLKAHPWVTEEEREKICSIMDCQKLTLEACTHAAQNERLPLRVVVQVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain