SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46278

Length: 260 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene46278
AAAGCTGGCCAATTGGAGAGTGCTCAGAATATCTTTCAGGAGATGGCAAAGAATGGTTTTGCACCAAATGTCACGACATACAATACCTTGATTTCTGTTGTTTGCGATCATTTGCAAGAAAAGAAGGCTTTGAAGATCTTTCATGAAATGGAGGAGGCTAACTGCAAGCCTGACCTTCAAACATACAACCCATTGCTAAAAGTGTGCTGTAAACTGAAGAGGATGAAGATACTTTCATATCTGGTAGATGATATGCTTAA

Ace file of the UniGene sp_v1.1_unigene46278

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RTM5_RICCO	-	-	5.0e-21	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	pentatricopeptide repeat-containing	-	-	1.02386e-21	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	1.02386e-21	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL58

Fln msg: Distance to subject end: 174 aas, your sequence is shorter than subject: 86 - 700

Fln protein: KAGQLESAQNIFQEMAKNGFAPNVTTYNTLISVVCDHLQEKKALKIFHEMEEANCKPDLQTYNPLLKVCCKLKRMKILSYLVDDML

Protein Length: 87

Fln nts: AAAGCTGGCCAATTGGAGAGTGCTCAGAATATCTTTCAGGAGATGGCAAAGAATGGTTTTGCACCAAATGTCACGACATACAATACCTTGATTTCTGTTGTTTGCGATCATTTGCAAGAAAAGAAGGCTTTGAAGATCTTTCATGAAATGGAGGAGGCTAACTGCAAGCCTGACCTTCAAACATACAACCCATTGCTAAAAGTGTGCTGTAAACTGAAGAGGATGAAGATACTTTCATATCTGGTAGATGATATGCTTAA

Fln Alignment:

sp_v1.1_unigene46278___KAGQLESAQNIFQEMAKNGFAPNVTTYNTLISVVCDHLQEKKALKIFHEMEEANCKPDLQTYNPLLK
B8LL58_______________KLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain