SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46269

Length: 232 nt

UniGene Fasta

>sp_v1.1_unigene46269
GAGGTTAAAGAAGTTCAGTCAGTTTTTGATGGCTTGGTGGGCGAGGGCCATAGGCCCTCTCTAGTTACTTTTACAACCCTTGTACGTGCTCTTACTGCCCAGAAACGTTACAAGCAGCTGAAATCAGTCATGTCTCGGATAGCAGAGTATGGAATGAAGCCAGATGTTATTCTTTACAACGCCATTCTCAATGGTTTCTGCCAAGCTAGGGAGATTGACAAAGCAATGGACA

Ace file of the UniGene sp_v1.1_unigene46269

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein	-	-	1.0e-14	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%
Blast2go	at5g21222-like protein	-	-	2.68345e-14	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	2.68345e-14	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL58

Fln msg: Distance to subject end: 286 aas, your sequence is shorter than subject: 77 - 700

Fln protein: EVKEVQSVFDGLVGEGHRPSLVTFTTLVRALTAQKRYKQLKSVMSRIAEYGMKPDVILYNAILNGFCQAREIDKAMD

Protein Length: 78

Fln nts: GAGGTTAAAGAAGTTCAGTCAGTTTTTGATGGCTTGGTGGGCGAGGGCCATAGGCCCTCTCTAGTTACTTTTACAACCCTTGTACGTGCTCTTACTGCCCAGAAACGTTACAAGCAGCTGAAATCAGTCATGTCTCGGATAGCAGAGTATGGAATGAAGCCAGATGTTATTCTTTACAACGCCATTCTCAATGGTTTCTGCCAAGCTAGGGAGATTGACAAAGCAATGGACA

Fln Alignment:

sp_v1.1_unigene46269___EVKEVQSVFDGLVGEGHRPSLVTFTTLVRALTAQKRYKQLKSVMSRIAEYGMKPDVILYNAILNGFCQAREIDKAMD
B8LL58_______________KMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain