SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene46206

Length: 570 nt

UniGene Fasta

>sp_v1.1_unigene46206
GGATCCAGAGTATTTCAGCACTCAAATATTGACAAAGAAGAGTGATGTGTATAGCTTTGGAGTGGTTTTGCTGGAGATTATATGTGGTAGACAACCTATAGATCAAAAACTACCTTTAGAGGAACTGAACATCATTAGATGGGTGACACCGTATGTACTAGGGAGTGATAATCCTTGCACAATAGCAAAAATCATTGACAAGAGGTTGGGTAGACGTTACGACGAGATATCCATAAGTGTTGTTGCCAAATTAGCGATGAGGTGCGTTCAGGCTGAACCGTCTTCGAGGCCGAGCGTGAGTGAGATTGTGGCAGAGCTAAGAGAGGCCATCAACATTGAGGATAAGGTTTCACTTCCATTTTCAGAGGAGATTGGTATGGAAAGTAGCGATTTGTTGTCAGCGGCGGTGTCTTTATCTGTGGATTCGAGTGGGCCTGGAGGCCGAATGGAGTGGAGTGCCAACAATTCCAACATTTCTCATGTCAAGGCGATGAGCCCGCACAGTCATGTTGAGGGTTGGGTGGAATAGAGGTTGCCGAGGAAGTCAGACCATGACATAGTGTACATTAC

Ace file of the UniGene sp_v1.1_unigene46206

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM40_MARPO	-	-	3.0e-24	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	receptor-like kinase	-	-	5.45975e-24	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to insect	GO:0002213	Biological Process	5.45975e-24	65%
Blast2go	defense response to fungus	GO:0050832	Biological Process	5.45975e-24	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	5.45975e-24	65%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	5.45975e-24	65%
Blast2go	Protein kinase-like domain	IPR011009	-	5.45975e-24	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRT7

Fln msg: your sequence is shorter than subject: 176 - 484

Fln protein: DPEYFSTQILTKKSDVYSFGVVLLEIICGRQPIDQKLPLEELNIIRWVTPYVLGSDNPCTIAKIIDKRLGRRYDEISISVVAKLAMRCVQAEPSSRPSVSEIVAELREAINIEDKVSLPFSEEIGMESSDLLSAAVSLSVDSSGPGGRMEWSANNSNISHVKAMSPHSHVEGWVE*

Protein Length: 177

Fln nts: GGATCCAGAGTATTTCAGCACTCAAATATTGACAAAGAAGAGTGATGTGTATAGCTTTGGAGTGGTTTTGCTGGAGATTATATGTGGTAGACAACCTATAGATCAAAAACTACCTTTAGAGGAACTGAACATCATTAGATGGGTGACACCGTATGTACTAGGGAGTGATAATCCTTGCACAATAGCAAAAATCATTGACAAGAGGTTGGGTAGACGTTACGACGAGATATCCATAAGTGTTGTTGCCAAATTAGCGATGAGGTGCGTTCAGGCTGAACCGTCTTCGAGGCCGAGCGTGAGTGAGATTGTGGCAGAGCTAAGAGAGGCCATCAACATTGAGGATAAGGTTTCACTTCCATTTTCAGAGGAGATTGGTATGGAAAGTAGCGATTTGTTGTCAGCGGCGGTGTCTTTATCTGTGGATTCGAGTGGGCCTGGAGGCCGAATGGAGTGGAGTGCCAACAATTCCAACATTTCTCATGTCAAGGCGATGAGCCCGCACAGTCATGTTGAGGGTTGGGTGGAATAG___AGGTTGCCGAGGAAGTCAGACCATGACATAGTGTACATTAC

Fln Alignment:

sp_v1.1_unigene46206___PEYFSTQILTKKSDVYSFGVVLLEIICGRQPIDQKLPLEELNIIRWVTPYVLGSDNPCTIAKIIDKRLGRRYDEISISVVAKLAMRCVQAEPSSRPSVSEIVAELREAINIEDKVSLPF
B8LRT7_______________PEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKSRPSGEHNLVEWARPY-LGEKR--RLYRLIDPRLDGNFSIKGAQKAAQLACHCLSRDPKARPLMSEVVEALRPLLNLKDMASSSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain