SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45955

Length: 1466 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene45955 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG1011 Predicted hydrolase (HAD superfamily)	-	-	8.0e-16	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	protein	-	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0Q9

Fln msg:

Fln protein: MEAVQSSVEAKMPLYDCLLFDLDDTLYPLSTGLQTTCRQNIEDYMVEVLKIDKSEVPSMCVDLHKSHGTTMAGLKAQGYEIDNDNFHSIVHGRLPYENLRPDPVLRSLLLSMPQRKIIFTNSDKVHATKTLSRLGLEDCFEGVICFETLNPPQQIVDNSNSLKAVNPITQTTGNEDDLETWFEALNSSEQIVDDTNSLKTVNPCTQTTGNEEDLETGITSHGKADYSDFLETINSDNSTDFKSPILCKPSLEAIELALKIANADPKRTIFFDDSVRNIAAGKAAGLHTVIVGRSDRTEGADFALESIHNIKEAIPEIWENEEKSEIEWYGRHLYSYGKIMIRTICYTAIKIRDMFKGLYK*

Protein Length: 362

Fln nts: GACGAATGGGCTCTTGGAGTTCACAGTCCGACTCCATGAGAGTATCGAAAAGTCGCAATGATCCTGAGTATGGCAACAGGGTGTCGTGCAAGCCTAGTAACCTTAGTCTGTGTTGGGTTCTTTCATTTCCGCGGCACAGGAGGAGGATCTCATCAATATCTGATTAATT_-_ATGGAGGCTGTACAAAGCTCTGTGGAAGCTAAGATGCCACTATATGACTGTCTTCTGTTTGATTTGGATGATACTCTGTATCCTCTAAGTACTGGACTTCAAACAACCTGCCGTCAGAATATTGAAGATTACATGGTTGAAGTTCTTAAAATTGATAAAAGCGAAGTTCCATCTATGTGCGTTGATCTTCACAAGAGTCATGGGACTACGATGGCTGGACTTAAGGCACAGGGCTATGAGATTGATAATGATAACTTTCATAGTATTGTGCATGGTAGATTGCCTTATGAGAACCTTAGACCTGATCCAGTGCTGAGGAGTTTGTTACTGAGTATGCCACAACGGAAAATAATATTCACCAATTCTGACAAAGTTCATGCTACAAAAACCTTAAGTAGGCTGGGATTGGAAGATTGTTTTGAAGGTGTAATATGCTTTGAAACACTGAATCCCCCTCAACAAATTGTTGATAATAGTAATAGCTTGAAAGCTGTCAACCCAATTACACAAACAACCGGTAATGAAGATGACTTGGAAACCTGGTTTGAAGCACTGAATAGCTCTGAACAAATTGTTGATGATACTAATAGCTTGAAGACTGTCAACCCATGTACGCAAACTACTGGTAATGAAGAAGACTTGGAAACCGGCATTACTTCTCATGGAAAAGCTGATTATAGTGATTTCTTGGAAACCATAAATAGTGATAATTCAACAGATTTCAAGTCTCCTATTCTTTGCAAGCCTTCCTTGGAGGCAATAGAATTGGCATTGAAAATAGCAAATGCAGATCCAAAAAGGACGATTTTCTTTGACGACAGTGTACGTAACATAGCAGCGGGCAAAGCTGCAGGGTTGCATACTGTTATAGTTGGCAGATCTGACCGAACAGAAGGAGCAGATTTTGCTCTCGAAAGCATTCACAACATAAAGGAAGCCATACCTGAGATTTGGGAAAATGAAGAAAAATCTGAAATTGAATGGTATGGACGACACTTATATAGCTATGGAAAAATAATGATACGGACGATATGTTATACTGCGATCAAAATAAGGGATATGTTTAAAGGATTATATAAATAA___TGGTTGGCCAAGGTCAAAACCTCACTACCAAGTATGTAAAAATTATATAAAAGATGAGTACTATATTGCATGGATAAGGCATGTGACAATGGTGTATATGTAAATTTGTTTAATATGAAATGTTCCATGGCCATGTAGAAGTATGGGAGGGCCATGGACCAACACAGTATAAAGAGTTGGAGATTAGTATGAGGGAAGGATATGATGATTCCCT

Fln Alignment:

sp_v1.1_unigene45955___MEAVQSSVEAKMPLYDCLLFDLDDTLYPLSTGLQTTCRQNIEDYMVEVLKIDKSEVPSMCVDLHKSHGTTMAGLKAQGYEIDNDNFHSIVHGRLPYENLRPDPVLRSLLLSMPQRKIIFTNSDKVHATKTLSRLGLEDCFEGVICFETLNPPQQIVDNSNSLKAVNPITQTTGNEDDLETWFEALNSSEQIVDDTNSLKTVNPCTQTTGNEEDLETGITSHGKADYSDFLETINSDNSTDFKSPILCKPSLEAIELALKIANADPKRTIFFDDSVRNIAAGKAAGLHTVIVGRSDRTEGADFALESIHNIKEA
A9P0Q9_______________MEGVERSGEAKMPQYDCLLFDLDDTLYPLSTGIQAACRKNIEDYMVEVLKIDESKVPSMCVDLYKSHGTTMAGLNALGYEFDNDDFHSFVHGRLPYDNLRPDPVLRSLLLSMPQRKIIFTNSDKVHATKTLSRLGLEDCFEGVICFETLNPSQQIVDNSNSLKTINQYTETIGDEDDLETWFETLNHSQQIVDDSNSLKTVKPCMQATGDEDDLETIVTSLGKADYCNGLETINSDNSTNSKSAILCKPSLEAMELALKIANADPKRTIFFDDSVRNIAAGKAAGLHTVLVGSSVRTEGADFALESIHNIKEA

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
1078		95	5		0.997749
1082	95			5	0.997749
1083		4	95		0.997494
1085		95		4	0.997494
1288		81		18	0.999994
1289		18		81	0.999994
1292	10		90		0.90298
1312	14	85			0.993533
1313	71			28	1.0
1314		14	85		0.993533
1316		14		85	0.993533
1317	71			14	0.984337
1318	28			71	1.0
1319	16			83	0.994512
1320		16	66	16	0.988813
1322			16	83	0.994512
1323		16	66		0.988813
1325			83	16	0.994512
1327			16	83	0.994512
1328	16	83			0.994512
1329	16	83			0.994512
1330	20			80	0.995493
1331	20	60			0.99255
1332		80	20		0.995493
1334		80	20		0.995493
1335		80		20	0.995493
1336	20		20	60	0.99255
1337	20		80		0.995493
1338	20			80	0.995493
1340		75		25	0.996473
1342	25		75		0.996473
1344	25		75		0.996473
1346	75	25			0.996473
1347	75		25		0.996473
1349			25	75	0.996473
1350			75	25	0.996473
1351	75	25			0.996473
1352	75	25			0.996473
1357		66		33	0.997453
1358		66	33		0.997453
1359	33	66			0.997452
1360	66		33		0.997452
1361	66			33	0.997452
1362		66	33		0.997453
1369	33	33		33	0.997752
1370	66		33		0.997453
1372	33	33	33		0.997751
1375		33	33	33	0.99775

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain