SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45944

Length: 475 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene45944
TGCTAATTCAGGTCTATTATCAAATTTTGAAGTGCTTGAGCTATTAAGGTCCAGGGGAGCTACCCAAGATCCCCTGGGTTCATTTGGATCTGCAACTCATTCTGAATGCAAGGTTTTTGACTACCTGGTTCAATCTGCGGCATGCAACCAAACTCTGGAGAGTGTGCAAGACTTTTTGCTGAAAGTTGAAAAGTTTTCACTTACAAAAGCAGAAAGGCTTCAAGTTCTGAATCTTAGGCCTTCAACGGCTGTTGAAGTCCATCTGATAGTAGAAGACTGTGAAGAGAGAATGTCAAGCTCAACTGTTGATGAACTTCTTGAAACAGTGAGGAATACTTTGCCACCTCCGCCAGAAAAGCCGGAGGAAGAAGAAGAAAATGCTGAAGCAGATGAGGTAAATGACGAAGAGATGGATGATGCAGGTGCTGAGGAACAAGAGGAATAATGTGGCCTGTTCNGTCAGCCATGCGTAGAT

Ace file of the UniGene sp_v1.1_unigene45944

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	catalytic/ nucleotide binding	-	-	2.0e-16	44%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	45%
Blast2go	catalytic nucleotide binding	-	-	3.69917e-24	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA polymerase II, Rpb4	IPR005574	-	3.69917e-24	66%
Blast2go	RNA polymerase II, Rpb4, core	IPR006590	-	3.69917e-24	66%
Blast2go	HRDC-like	IPR010997	-	3.69917e-24	66%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A3CHF5

Fln msg: atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning,

Fln protein: ANSGLLSNFEVLELLRSRGATQDPLGSFGSATHSECKVFDYLVQSAACNQTLESVQDFLLKVEKFSLTKAERLQVLNLRPSTAVEVHLIVEDCEERMSSSTVDELLETVRNTLPPPPEKPEEEEENAEADEVNDEEMDDAGAEEQEE*

Protein Length: 149

Fln nts: TGCTAATTCAGGTCTATTATCAAATTTTGAAGTGCTTGAGCTATTAAGGTCCAGGGGAGCTACCCAAGATCCCCTGGGTTCATTTGGATCTGCAACTCATTCTGAATGCAAGGTTTTTGACTACCTGGTTCAATCTGCGGCATGCAACCAAACTCTGGAGAGTGTGCAAGACTTTTTGCTGAAAGTTGAAAAGTTTTCACTTACAAAAGCAGAAAGGCTTCAAGTTCTGAATCTTAGGCCTTCAACGGCTGTTGAAGTCCATCTGATAGTAGAAGACTGTGAAGAGAGAATGTCAAGCTCAACTGTTGATGAACTTCTTGAAACAGTGAGGAATACTTTGCCACCTCCGCCAGAAAAGCCGGAGGAAGAAGAAGAAAATGCTGAAGCAGATGAGGTAAATGACGAAGAGATGGATGATGCAGGTGCTGAGGAACAAGAGGAATAA___TGTGGCCTGTTCaGTCAGCCATGCGTAGAT

Fln Alignment:

sp_v1.1_unigene45944___NSGLLSNFEVLELLRSRGATQDPLGSFGSATHSECKVFDYLVQSAACNQTLESVQDFLLKVEKFSLTKAERLQVLNLRPSTAVEVHLIVEDCEERMS----------SSTVDELLETVR
A3CHF5_______________NAGFLTNFEVLDFLRSRGAKTDPMGCLGAVAASECKVYEYLLKTPACNQTRESINEFVTRCESFKLTNADKLNVINWRPSSAADAYAMIEECGKRFSKDERGEACNEDERVEEFLELVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain