SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45880

Length: 574 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene45880
TAATATTACCATCTTATAATCATCGTCATTGTCACACATTTAGATTCTTATTTGTTAACTATCACTAGGTTGTATCATCAGCAAACATTAGCTGCAAACTATAATTTAGAGAATATCATCAAAACAGCAACAATATGGGGAACGTATTTGTCAGCCTATTTAAAAATTTGTTCGGCAAAAGAGAAATGAGAATTCTCATGGTCGGATTGGATGCAGCTGGTAAAACGACCATCCTATACAAATTGAAATTGGGCGAAATAGTGACGACCATTCCAACTATTGGGTTTAATGTAGAGACAGTTGAATATAAGAATATAAGCTTTACAGTTTGGGATGTCGGTGGACAAGATAAGATCAGGCCCCTGTGGAGACATTATTTTCAAAATACCCAAGGTCTTATATTTGTTGTTGACAGCAATGACCGTGAAAGAGTCGGCGAAGCTAAAGACGAGCTTATGAAAATGCTCACAGAGGATGAGCTACGTGATGCTGTCTTATTAATATTTGCCAACAAACAAGATTTACCTAATGCTATGACTGCTGCTGAGATAACAGATAAACTTGGTTTGCATTC

Ace file of the UniGene sp_v1.1_unigene45880

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor 1 n=15 Tax=Fungi/Metazoa group RepID=ARF1_HUMAN	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	adp-ribosylation factor 1	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in birth or egg hatching	GO:0009792	Biological Process	96%
Blast2go	regulation of cell shape	GO:0008360	Biological Process	96%
Blast2go	cell adhesion	GO:0007155	Biological Process	96%
Blast2go	positive regulation of growth rate	GO:0040010	Biological Process	96%
Blast2go	locomotion	GO:0040011	Biological Process	96%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	96%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	96%
Blast2go	morphogenesis of an epithelium	GO:0002009	Biological Process	96%
Blast2go	oocyte development	GO:0048599	Biological Process	96%
Blast2go	hermaphrodite genitalia development	GO:0040035	Biological Process	96%
Blast2go	protein binding	GO:0005515	Molecular Function	96%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	96%
Blast2go	cytosol	GO:0005829	Cellular Component	96%
Blast2go	endomembrane system	GO:0012505	Cellular Component	96%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	96%
Blast2go	sarcomere	GO:0030017	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTP-binding protein domain	IPR005225	-	96%
Blast2go	Small GTPase superfamily, SAR1-type	IPR006687	-	96%
Blast2go	ADP-ribosylation factor	IPR006688	-	96%
Blast2go	Small GTPase superfamily, ARF/SAR type	IPR006689	-	96%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPS8

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 146 - 181

Fln protein: MGNVFVSLFKNLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAKDELMKMLTEDELRDAVLLIFANKQDLPNAMTAAEITDKLGLH

Protein Length: 147

Fln nts: TAATATTACCATCTTATAATCATCGTCATTGTCACACATTTAGATTCTTATTTGTTAACTATCACTAGGTTGTATCATCAGCAAACATTAGCTGCAAACTATAATTTAGAGAATATCATCAAAACAGCAACAAT_-_ATGGGGAACGTATTTGTCAGCCTATTTAAAAATTTGTTCGGCAAAAGAGAAATGAGAATTCTCATGGTCGGATTGGATGCAGCTGGTAAAACGACCATCCTATACAAATTGAAATTGGGCGAAATAGTGACGACCATTCCAACTATTGGGTTTAATGTAGAGACAGTTGAATATAAGAATATAAGCTTTACAGTTTGGGATGTCGGTGGACAAGATAAGATCAGGCCCCTGTGGAGACATTATTTTCAAAATACCCAAGGTCTTATATTTGTTGTTGACAGCAATGACCGTGAAAGAGTCGGCGAAGCTAAAGACGAGCTTATGAAAATGCTCACAGAGGATGAGCTACGTGATGCTGTCTTATTAATATTTGCCAACAAACAAGATTTACCTAATGCTATGACTGCTGCTGAGATAACAGATAAACTTGGTTTGCATTC

Fln Alignment:

sp_v1.1_unigene45880___MGNVFVSLFKNLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAKDELMKMLTEDELRDAVLLIFANKQDLPNAMTAAEITDKLGLH
B8LPS8_______________MGLTFTKLFQRMFAKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVAEARDELHRMLNEDELRDAVLLVFANKQDLPNAMTAAEITDKLGLH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain